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[ aws . omics ]

get-workflow

Description

Gets information about a workflow.

If a workflow is shared with you, you cannot export the workflow.

See also: AWS API Documentation

Synopsis

  get-workflow
--id <value>
[--type <value>]
[--export <value>]
[--workflow-owner-id <value>]
[--cli-input-json <value>]
[--generate-cli-skeleton <value>]
[--debug]
[--endpoint-url <value>]
[--no-verify-ssl]
[--no-paginate]
[--output <value>]
[--query <value>]
[--profile <value>]
[--region <value>]
[--version <value>]
[--color <value>]
[--no-sign-request]
[--ca-bundle <value>]
[--cli-read-timeout <value>]
[--cli-connect-timeout <value>]

Options

--id (string)

The workflow's ID.

--type (string)

The workflow's type.

Possible values:

• PRIVATE
• READY2RUN

--export (list)

The export format for the workflow.

(string)

Syntax:

"string" "string" ...

Where valid values are:
  DEFINITION

--workflow-owner-id (string)

The ID of the workflow owner.

--cli-input-json (string) Performs service operation based on the JSON string provided. The JSON string follows the format provided by --generate-cli-skeleton. If other arguments are provided on the command line, the CLI values will override the JSON-provided values. It is not possible to pass arbitrary binary values using a JSON-provided value as the string will be taken literally.

--generate-cli-skeleton (string) Prints a JSON skeleton to standard output without sending an API request. If provided with no value or the value input, prints a sample input JSON that can be used as an argument for --cli-input-json. If provided with the value output, it validates the command inputs and returns a sample output JSON for that command.

Global Options

--debug (boolean)

Turn on debug logging.

--endpoint-url (string)

Override command's default URL with the given URL.

--no-verify-ssl (boolean)

By default, the AWS CLI uses SSL when communicating with AWS services. For each SSL connection, the AWS CLI will verify SSL certificates. This option overrides the default behavior of verifying SSL certificates.

--no-paginate (boolean)

Disable automatic pagination. If automatic pagination is disabled, the AWS CLI will only make one call, for the first page of results.

--output (string)

The formatting style for command output.

• json
• text
• table

--query (string)

A JMESPath query to use in filtering the response data.

--profile (string)

Use a specific profile from your credential file.

--region (string)

The region to use. Overrides config/env settings.

--version (string)

Display the version of this tool.

--color (string)

Turn on/off color output.

• on
• off
• auto

--no-sign-request (boolean)

Do not sign requests. Credentials will not be loaded if this argument is provided.

--ca-bundle (string)

The CA certificate bundle to use when verifying SSL certificates. Overrides config/env settings.

--cli-read-timeout (int)

The maximum socket read time in seconds. If the value is set to 0, the socket read will be blocking and not timeout. The default value is 60 seconds.

--cli-connect-timeout (int)

The maximum socket connect time in seconds. If the value is set to 0, the socket connect will be blocking and not timeout. The default value is 60 seconds.

Examples

Note

To use the following examples, you must have the AWS CLI installed and configured. See the Getting started guide in the AWS CLI User Guide for more information.

Unless otherwise stated, all examples have unix-like quotation rules. These examples will need to be adapted to your terminal's quoting rules. See Using quotation marks with strings in the AWS CLI User Guide .

To view a workflow

The following get-workflow example gets details about a workflow with ID 1234567.

aws omics get-workflow \
    --id 1234567

Output:

{
    "arn": "arn:aws:omics:us-west-2:123456789012:workflow/1234567",
    "creationTime": "2022-11-30T22:33:16.225368Z",
    "digest": "sha256:c54bxmpl742dcc26f7fa1f10e37550ddd8f251f418277c0a58e895b801ed28cf",
    "engine": "WDL",
    "id": "1234567",
    "main": "workflow-crambam.wdl",
    "name": "cram-converter",
    "parameterTemplate": {
        "ref_dict": {
            "description": "dictionary file for 'ref_fasta'"
        },
        "ref_fasta_index": {
            "description": "Index of the reference genome fasta file"
        },
        "ref_fasta": {
            "description": "Reference genome fasta file"
        },
        "input_cram": {
            "description": "The Cram file to convert to BAM"
        },
        "sample_name": {
            "description": "The name of the input sample, used to name the output BAM"
        }
    },
    "status": "ACTIVE",
    "statusMessage": "workflow-crambam.wdl\n    workflow CramToBamFlow\n        call CramToBamTask\n        call ValidateSamFile\n    task CramToBamTask\n    task ValidateSamFile\n",
    "tags": {},
    "type": "PRIVATE"
}

For more information, see Omics Workflows in the Amazon Omics Developer Guide.

Output

arn -> (string)

The workflow's ARN.

id -> (string)

The workflow's ID.

status -> (string)

The workflow's status.

type -> (string)

The workflow's type.

name -> (string)

The workflow's name.

description -> (string)

The workflow's description.

engine -> (string)

The workflow's engine.

definition -> (string)

The workflow's definition.

main -> (string)

The path of the main definition file for the workflow.

digest -> (string)

The workflow's digest.

parameterTemplate -> (map)

The workflow's parameter template.

key -> (string)

value -> (structure)

A workflow parameter.

description -> (string)

The parameter's description.

optional -> (boolean)

Whether the parameter is optional.

storageCapacity -> (integer)

The workflow's default run storage capacity in gibibytes.

creationTime -> (timestamp)

When the workflow was created.

statusMessage -> (string)

The workflow's status message.

tags -> (map)

The workflow's tags.

key -> (string)

value -> (string)

metadata -> (map)

Gets metadata for workflow.

key -> (string)

value -> (string)

accelerators -> (string)

The computational accelerator specified to run the workflow.