AbortMultipartReadSetUpload

$result = $client->abortMultipartReadSetUpload([/* ... */]);
$promise = $client->abortMultipartReadSetUploadAsync([/* ... */]);

Stops a multipart upload.

Parameter Syntax

$result = $client->abortMultipartReadSetUpload([
    'sequenceStoreId' => '<string>', // REQUIRED
    'uploadId' => '<string>', // REQUIRED
]);

Parameter Details

Result Syntax

[]

Result Details

Errors

InternalServerException:

An unexpected error occurred. Try the request again.

NotSupportedOperationException:

The operation is not supported by Amazon Omics, or the API does not exist.

ServiceQuotaExceededException:

The request exceeds a service quota.

ThrottlingException:

The request was denied due to request throttling.

ValidationException:

The input fails to satisfy the constraints specified by an AWS service.

ResourceNotFoundException:

The target resource was not found in the current Region.

AccessDeniedException:

You do not have sufficient access to perform this action.

RequestTimeoutException:

The request timed out.

AcceptShare

$result = $client->acceptShare([/* ... */]);
$promise = $client->acceptShareAsync([/* ... */]);

Accept a resource share request.

Parameter Syntax

$result = $client->acceptShare([
    'shareId' => '<string>', // REQUIRED
]);

Parameter Details

Result Syntax

[
    'status' => 'PENDING|ACTIVATING|ACTIVE|DELETING|DELETED|FAILED',
]

Result Details

Errors

InternalServerException:

An unexpected error occurred. Try the request again.

ServiceQuotaExceededException:

The request exceeds a service quota.

ThrottlingException:

The request was denied due to request throttling.

ValidationException:

The input fails to satisfy the constraints specified by an AWS service.

ConflictException:

The request cannot be applied to the target resource in its current state.

ResourceNotFoundException:

The target resource was not found in the current Region.

AccessDeniedException:

You do not have sufficient access to perform this action.

BatchDeleteReadSet

$result = $client->batchDeleteReadSet([/* ... */]);
$promise = $client->batchDeleteReadSetAsync([/* ... */]);

Deletes one or more read sets.

Parameter Syntax

$result = $client->batchDeleteReadSet([
    'ids' => ['<string>', ...], // REQUIRED
    'sequenceStoreId' => '<string>', // REQUIRED
]);

Parameter Details

Result Syntax

[
    'errors' => [
        [
            'code' => '<string>',
            'id' => '<string>',
            'message' => '<string>',
        ],
        // ...
    ],
]

Result Details

Errors

InternalServerException:

An unexpected error occurred. Try the request again.

ThrottlingException:

The request was denied due to request throttling.

ValidationException:

The input fails to satisfy the constraints specified by an AWS service.

ResourceNotFoundException:

The target resource was not found in the current Region.

AccessDeniedException:

You do not have sufficient access to perform this action.

RequestTimeoutException:

The request timed out.

CancelAnnotationImportJob

$result = $client->cancelAnnotationImportJob([/* ... */]);
$promise = $client->cancelAnnotationImportJobAsync([/* ... */]);

Cancels an annotation import job.

Parameter Syntax

$result = $client->cancelAnnotationImportJob([
    'jobId' => '<string>', // REQUIRED
]);

Parameter Details

Result Syntax

[]

Result Details

Errors

InternalServerException:

An unexpected error occurred. Try the request again.

ThrottlingException:

The request was denied due to request throttling.

ValidationException:

The input fails to satisfy the constraints specified by an AWS service.

ResourceNotFoundException:

The target resource was not found in the current Region.

AccessDeniedException:

You do not have sufficient access to perform this action.

CancelRun

$result = $client->cancelRun([/* ... */]);
$promise = $client->cancelRunAsync([/* ... */]);

Cancels a run.

Parameter Syntax

$result = $client->cancelRun([
    'id' => '<string>', // REQUIRED
]);

Parameter Details

Result Syntax

[]

Result Details

Errors

InternalServerException:

An unexpected error occurred. Try the request again.

ServiceQuotaExceededException:

The request exceeds a service quota.

ThrottlingException:

The request was denied due to request throttling.

ValidationException:

The input fails to satisfy the constraints specified by an AWS service.

ConflictException:

The request cannot be applied to the target resource in its current state.

ResourceNotFoundException:

The target resource was not found in the current Region.

AccessDeniedException:

You do not have sufficient access to perform this action.

RequestTimeoutException:

The request timed out.

CancelVariantImportJob

$result = $client->cancelVariantImportJob([/* ... */]);
$promise = $client->cancelVariantImportJobAsync([/* ... */]);

Cancels a variant import job.

Parameter Syntax

$result = $client->cancelVariantImportJob([
    'jobId' => '<string>', // REQUIRED
]);

Parameter Details

Result Syntax

[]

Result Details

Errors

InternalServerException:

An unexpected error occurred. Try the request again.

ThrottlingException:

The request was denied due to request throttling.

ValidationException:

The input fails to satisfy the constraints specified by an AWS service.

ResourceNotFoundException:

The target resource was not found in the current Region.

AccessDeniedException:

You do not have sufficient access to perform this action.

CompleteMultipartReadSetUpload

$result = $client->completeMultipartReadSetUpload([/* ... */]);
$promise = $client->completeMultipartReadSetUploadAsync([/* ... */]);

Concludes a multipart upload once you have uploaded all the components.

Parameter Syntax

$result = $client->completeMultipartReadSetUpload([
    'parts' => [ // REQUIRED
        [
            'checksum' => '<string>', // REQUIRED
            'partNumber' => <integer>, // REQUIRED
            'partSource' => 'SOURCE1|SOURCE2', // REQUIRED
        ],
        // ...
    ],
    'sequenceStoreId' => '<string>', // REQUIRED
    'uploadId' => '<string>', // REQUIRED
]);

Parameter Details

Result Syntax

[
    'readSetId' => '<string>',
]

Result Details

Errors

InternalServerException:

An unexpected error occurred. Try the request again.

NotSupportedOperationException:

The operation is not supported by Amazon Omics, or the API does not exist.

ServiceQuotaExceededException:

The request exceeds a service quota.

ThrottlingException:

The request was denied due to request throttling.

ValidationException:

The input fails to satisfy the constraints specified by an AWS service.

ResourceNotFoundException:

The target resource was not found in the current Region.

AccessDeniedException:

You do not have sufficient access to perform this action.

RequestTimeoutException:

The request timed out.

CreateAnnotationStore

$result = $client->createAnnotationStore([/* ... */]);
$promise = $client->createAnnotationStoreAsync([/* ... */]);

Creates an annotation store.

Parameter Syntax

$result = $client->createAnnotationStore([
    'description' => '<string>',
    'name' => '<string>',
    'reference' => [
        'referenceArn' => '<string>',
    ],
    'sseConfig' => [
        'keyArn' => '<string>',
        'type' => 'KMS', // REQUIRED
    ],
    'storeFormat' => 'GFF|TSV|VCF', // REQUIRED
    'storeOptions' => [
        'tsvStoreOptions' => [
            'annotationType' => 'GENERIC|CHR_POS|CHR_POS_REF_ALT|CHR_START_END_ONE_BASE|CHR_START_END_REF_ALT_ONE_BASE|CHR_START_END_ZERO_BASE|CHR_START_END_REF_ALT_ZERO_BASE',
            'formatToHeader' => ['<string>', ...],
            'schema' => [
                ['<string>', ...],
                // ...
            ],
        ],
    ],
    'tags' => ['<string>', ...],
    'versionName' => '<string>',
]);

Parameter Details

Result Syntax

[
    'creationTime' => <DateTime>,
    'id' => '<string>',
    'name' => '<string>',
    'reference' => [
        'referenceArn' => '<string>',
    ],
    'status' => 'CREATING|UPDATING|DELETING|ACTIVE|FAILED',
    'storeFormat' => 'GFF|TSV|VCF',
    'storeOptions' => [
        'tsvStoreOptions' => [
            'annotationType' => 'GENERIC|CHR_POS|CHR_POS_REF_ALT|CHR_START_END_ONE_BASE|CHR_START_END_REF_ALT_ONE_BASE|CHR_START_END_ZERO_BASE|CHR_START_END_REF_ALT_ZERO_BASE',
            'formatToHeader' => ['<string>', ...],
            'schema' => [
                ['<string>', ...],
                // ...
            ],
        ],
    ],
    'versionName' => '<string>',
]

Result Details

Errors

InternalServerException:

An unexpected error occurred. Try the request again.

ServiceQuotaExceededException:

The request exceeds a service quota.

ThrottlingException:

The request was denied due to request throttling.

ValidationException:

The input fails to satisfy the constraints specified by an AWS service.

ConflictException:

The request cannot be applied to the target resource in its current state.

ResourceNotFoundException:

The target resource was not found in the current Region.

AccessDeniedException:

You do not have sufficient access to perform this action.

CreateAnnotationStoreVersion

$result = $client->createAnnotationStoreVersion([/* ... */]);
$promise = $client->createAnnotationStoreVersionAsync([/* ... */]);

Creates a new version of an annotation store.

Parameter Syntax

$result = $client->createAnnotationStoreVersion([
    'description' => '<string>',
    'name' => '<string>', // REQUIRED
    'tags' => ['<string>', ...],
    'versionName' => '<string>', // REQUIRED
    'versionOptions' => [
        'tsvVersionOptions' => [
            'annotationType' => 'GENERIC|CHR_POS|CHR_POS_REF_ALT|CHR_START_END_ONE_BASE|CHR_START_END_REF_ALT_ONE_BASE|CHR_START_END_ZERO_BASE|CHR_START_END_REF_ALT_ZERO_BASE',
            'formatToHeader' => ['<string>', ...],
            'schema' => [
                ['<string>', ...],
                // ...
            ],
        ],
    ],
]);

Parameter Details

Result Syntax

[
    'creationTime' => <DateTime>,
    'id' => '<string>',
    'name' => '<string>',
    'status' => 'CREATING|UPDATING|DELETING|ACTIVE|FAILED',
    'storeId' => '<string>',
    'versionName' => '<string>',
    'versionOptions' => [
        'tsvVersionOptions' => [
            'annotationType' => 'GENERIC|CHR_POS|CHR_POS_REF_ALT|CHR_START_END_ONE_BASE|CHR_START_END_REF_ALT_ONE_BASE|CHR_START_END_ZERO_BASE|CHR_START_END_REF_ALT_ZERO_BASE',
            'formatToHeader' => ['<string>', ...],
            'schema' => [
                ['<string>', ...],
                // ...
            ],
        ],
    ],
]

Result Details

Errors

InternalServerException:

An unexpected error occurred. Try the request again.

ServiceQuotaExceededException:

The request exceeds a service quota.

ThrottlingException:

The request was denied due to request throttling.

ValidationException:

The input fails to satisfy the constraints specified by an AWS service.

ConflictException:

The request cannot be applied to the target resource in its current state.

ResourceNotFoundException:

The target resource was not found in the current Region.

AccessDeniedException:

You do not have sufficient access to perform this action.

CreateMultipartReadSetUpload

$result = $client->createMultipartReadSetUpload([/* ... */]);
$promise = $client->createMultipartReadSetUploadAsync([/* ... */]);

Begins a multipart read set upload.

Parameter Syntax

$result = $client->createMultipartReadSetUpload([
    'clientToken' => '<string>',
    'description' => '<string>',
    'generatedFrom' => '<string>',
    'name' => '<string>', // REQUIRED
    'referenceArn' => '<string>',
    'sampleId' => '<string>', // REQUIRED
    'sequenceStoreId' => '<string>', // REQUIRED
    'sourceFileType' => 'FASTQ|BAM|CRAM|UBAM', // REQUIRED
    'subjectId' => '<string>', // REQUIRED
    'tags' => ['<string>', ...],
]);

Parameter Details

Result Syntax

[
    'creationTime' => <DateTime>,
    'description' => '<string>',
    'generatedFrom' => '<string>',
    'name' => '<string>',
    'referenceArn' => '<string>',
    'sampleId' => '<string>',
    'sequenceStoreId' => '<string>',
    'sourceFileType' => 'FASTQ|BAM|CRAM|UBAM',
    'subjectId' => '<string>',
    'tags' => ['<string>', ...],
    'uploadId' => '<string>',
]

Result Details

Errors

InternalServerException:

An unexpected error occurred. Try the request again.

NotSupportedOperationException:

The operation is not supported by Amazon Omics, or the API does not exist.

ServiceQuotaExceededException:

The request exceeds a service quota.

ThrottlingException:

The request was denied due to request throttling.

ValidationException:

The input fails to satisfy the constraints specified by an AWS service.

ResourceNotFoundException:

The target resource was not found in the current Region.

AccessDeniedException:

You do not have sufficient access to perform this action.

RequestTimeoutException:

The request timed out.

CreateReferenceStore

$result = $client->createReferenceStore([/* ... */]);
$promise = $client->createReferenceStoreAsync([/* ... */]);

Creates a reference store.

Parameter Syntax

$result = $client->createReferenceStore([
    'clientToken' => '<string>',
    'description' => '<string>',
    'name' => '<string>', // REQUIRED
    'sseConfig' => [
        'keyArn' => '<string>',
        'type' => 'KMS', // REQUIRED
    ],
    'tags' => ['<string>', ...],
]);

Parameter Details

Result Syntax

[
    'arn' => '<string>',
    'creationTime' => <DateTime>,
    'description' => '<string>',
    'id' => '<string>',
    'name' => '<string>',
    'sseConfig' => [
        'keyArn' => '<string>',
        'type' => 'KMS',
    ],
]

Result Details

Errors

InternalServerException:

An unexpected error occurred. Try the request again.

ServiceQuotaExceededException:

The request exceeds a service quota.

ThrottlingException:

The request was denied due to request throttling.

ValidationException:

The input fails to satisfy the constraints specified by an AWS service.

AccessDeniedException:

You do not have sufficient access to perform this action.

RequestTimeoutException:

The request timed out.

CreateRunCache

$result = $client->createRunCache([/* ... */]);
$promise = $client->createRunCacheAsync([/* ... */]);

You can create a run cache to save the task outputs from completed tasks in a run for a private workflow. Subsequent runs use the task outputs from the cache, rather than computing the task outputs again. You specify an Amazon S3 location where HealthOmics saves the cached data. This data must be immediately accessible (not in an archived state).

For more information, see Creating a run cache in the AWS HealthOmics User Guide.

Parameter Syntax

$result = $client->createRunCache([
    'cacheBehavior' => 'CACHE_ON_FAILURE|CACHE_ALWAYS',
    'cacheBucketOwnerId' => '<string>',
    'cacheS3Location' => '<string>', // REQUIRED
    'description' => '<string>',
    'name' => '<string>',
    'requestId' => '<string>', // REQUIRED
    'tags' => ['<string>', ...],
]);

Parameter Details

Result Syntax

[
    'arn' => '<string>',
    'id' => '<string>',
    'status' => 'ACTIVE|DELETED|FAILED',
    'tags' => ['<string>', ...],
]

Result Details

Errors

InternalServerException:

An unexpected error occurred. Try the request again.

ServiceQuotaExceededException:

The request exceeds a service quota.

ThrottlingException:

The request was denied due to request throttling.

ValidationException:

The input fails to satisfy the constraints specified by an AWS service.

ConflictException:

The request cannot be applied to the target resource in its current state.

ResourceNotFoundException:

The target resource was not found in the current Region.

AccessDeniedException:

You do not have sufficient access to perform this action.

RequestTimeoutException:

The request timed out.

CreateRunGroup

$result = $client->createRunGroup([/* ... */]);
$promise = $client->createRunGroupAsync([/* ... */]);

You can optionally create a run group to limit the compute resources for the runs that you add to the group.

Parameter Syntax

$result = $client->createRunGroup([
    'maxCpus' => <integer>,
    'maxDuration' => <integer>,
    'maxGpus' => <integer>,
    'maxRuns' => <integer>,
    'name' => '<string>',
    'requestId' => '<string>', // REQUIRED
    'tags' => ['<string>', ...],
]);

Parameter Details

Result Syntax

[
    'arn' => '<string>',
    'id' => '<string>',
    'tags' => ['<string>', ...],
]

Result Details

Errors

InternalServerException:

An unexpected error occurred. Try the request again.

ServiceQuotaExceededException:

The request exceeds a service quota.

ThrottlingException:

The request was denied due to request throttling.

ValidationException:

The input fails to satisfy the constraints specified by an AWS service.

ConflictException:

The request cannot be applied to the target resource in its current state.

ResourceNotFoundException:

The target resource was not found in the current Region.

AccessDeniedException:

You do not have sufficient access to perform this action.

RequestTimeoutException:

The request timed out.

CreateSequenceStore

$result = $client->createSequenceStore([/* ... */]);
$promise = $client->createSequenceStoreAsync([/* ... */]);

Creates a sequence store.

Parameter Syntax

$result = $client->createSequenceStore([
    'clientToken' => '<string>',
    'description' => '<string>',
    'eTagAlgorithmFamily' => 'MD5up|SHA256up|SHA512up',
    'fallbackLocation' => '<string>',
    'name' => '<string>', // REQUIRED
    'propagatedSetLevelTags' => ['<string>', ...],
    's3AccessConfig' => [
        'accessLogLocation' => '<string>',
    ],
    'sseConfig' => [
        'keyArn' => '<string>',
        'type' => 'KMS', // REQUIRED
    ],
    'tags' => ['<string>', ...],
]);

Parameter Details

Result Syntax

[
    'arn' => '<string>',
    'creationTime' => <DateTime>,
    'description' => '<string>',
    'eTagAlgorithmFamily' => 'MD5up|SHA256up|SHA512up',
    'fallbackLocation' => '<string>',
    'id' => '<string>',
    'name' => '<string>',
    'propagatedSetLevelTags' => ['<string>', ...],
    's3Access' => [
        'accessLogLocation' => '<string>',
        's3AccessPointArn' => '<string>',
        's3Uri' => '<string>',
    ],
    'sseConfig' => [
        'keyArn' => '<string>',
        'type' => 'KMS',
    ],
    'status' => 'CREATING|ACTIVE|UPDATING|DELETING|FAILED',
    'statusMessage' => '<string>',
]

Result Details

Errors

InternalServerException:

An unexpected error occurred. Try the request again.

ServiceQuotaExceededException:

The request exceeds a service quota.

ThrottlingException:

The request was denied due to request throttling.

ValidationException:

The input fails to satisfy the constraints specified by an AWS service.

AccessDeniedException:

You do not have sufficient access to perform this action.

RequestTimeoutException:

The request timed out.

CreateShare

$result = $client->createShare([/* ... */]);
$promise = $client->createShareAsync([/* ... */]);

Creates a cross-account shared resource. The resource owner makes an offer to share the resource with the principal subscriber (an AWS user with a different account than the resource owner).

The following resources support cross-account sharing:

• HealthOmics variant stores

• HealthOmics annotation stores

• Private workflows

Parameter Syntax

$result = $client->createShare([
    'principalSubscriber' => '<string>', // REQUIRED
    'resourceArn' => '<string>', // REQUIRED
    'shareName' => '<string>',
]);

Parameter Details

Result Syntax

[
    'shareId' => '<string>',
    'shareName' => '<string>',
    'status' => 'PENDING|ACTIVATING|ACTIVE|DELETING|DELETED|FAILED',
]

Result Details

Errors

InternalServerException:

An unexpected error occurred. Try the request again.

ServiceQuotaExceededException:

The request exceeds a service quota.

ThrottlingException:

The request was denied due to request throttling.

ValidationException:

The input fails to satisfy the constraints specified by an AWS service.

ConflictException:

The request cannot be applied to the target resource in its current state.

ResourceNotFoundException:

The target resource was not found in the current Region.

AccessDeniedException:

You do not have sufficient access to perform this action.

CreateVariantStore

$result = $client->createVariantStore([/* ... */]);
$promise = $client->createVariantStoreAsync([/* ... */]);

Creates a variant store.

Parameter Syntax

$result = $client->createVariantStore([
    'description' => '<string>',
    'name' => '<string>',
    'reference' => [ // REQUIRED
        'referenceArn' => '<string>',
    ],
    'sseConfig' => [
        'keyArn' => '<string>',
        'type' => 'KMS', // REQUIRED
    ],
    'tags' => ['<string>', ...],
]);

Parameter Details

Result Syntax

[
    'creationTime' => <DateTime>,
    'id' => '<string>',
    'name' => '<string>',
    'reference' => [
        'referenceArn' => '<string>',
    ],
    'status' => 'CREATING|UPDATING|DELETING|ACTIVE|FAILED',
]

Result Details

Errors

InternalServerException:

An unexpected error occurred. Try the request again.

ServiceQuotaExceededException:

The request exceeds a service quota.

ThrottlingException:

The request was denied due to request throttling.

ValidationException:

The input fails to satisfy the constraints specified by an AWS service.

ConflictException:

The request cannot be applied to the target resource in its current state.

ResourceNotFoundException:

The target resource was not found in the current Region.

AccessDeniedException:

You do not have sufficient access to perform this action.

CreateWorkflow

$result = $client->createWorkflow([/* ... */]);
$promise = $client->createWorkflowAsync([/* ... */]);

Creates a workflow.

Parameter Syntax

$result = $client->createWorkflow([
    'accelerators' => 'GPU',
    'definitionUri' => '<string>',
    'definitionZip' => <string || resource || Psr\Http\Message\StreamInterface>,
    'description' => '<string>',
    'engine' => 'WDL|NEXTFLOW|CWL',
    'main' => '<string>',
    'name' => '<string>',
    'parameterTemplate' => [
        '<WorkflowParameterName>' => [
            'description' => '<string>',
            'optional' => true || false,
        ],
        // ...
    ],
    'requestId' => '<string>', // REQUIRED
    'storageCapacity' => <integer>,
    'tags' => ['<string>', ...],
]);

Parameter Details

Result Syntax

[
    'arn' => '<string>',
    'id' => '<string>',
    'status' => 'CREATING|ACTIVE|UPDATING|DELETED|FAILED|INACTIVE',
    'tags' => ['<string>', ...],
]

Result Details

Errors

InternalServerException:

An unexpected error occurred. Try the request again.

ServiceQuotaExceededException:

The request exceeds a service quota.

ThrottlingException:

The request was denied due to request throttling.

ValidationException:

The input fails to satisfy the constraints specified by an AWS service.

ConflictException:

The request cannot be applied to the target resource in its current state.

ResourceNotFoundException:

The target resource was not found in the current Region.

AccessDeniedException:

You do not have sufficient access to perform this action.

RequestTimeoutException:

The request timed out.

DeleteAnnotationStore

$result = $client->deleteAnnotationStore([/* ... */]);
$promise = $client->deleteAnnotationStoreAsync([/* ... */]);

Deletes an annotation store.

Parameter Syntax

$result = $client->deleteAnnotationStore([
    'force' => true || false,
    'name' => '<string>', // REQUIRED
]);

Parameter Details

Result Syntax

[
    'status' => 'CREATING|UPDATING|DELETING|ACTIVE|FAILED',
]

Result Details

Errors

InternalServerException:

An unexpected error occurred. Try the request again.

ThrottlingException:

The request was denied due to request throttling.

ValidationException:

The input fails to satisfy the constraints specified by an AWS service.

ConflictException:

The request cannot be applied to the target resource in its current state.

ResourceNotFoundException:

The target resource was not found in the current Region.

AccessDeniedException:

You do not have sufficient access to perform this action.

DeleteAnnotationStoreVersions

$result = $client->deleteAnnotationStoreVersions([/* ... */]);
$promise = $client->deleteAnnotationStoreVersionsAsync([/* ... */]);

Deletes one or multiple versions of an annotation store.

Parameter Syntax

$result = $client->deleteAnnotationStoreVersions([
    'force' => true || false,
    'name' => '<string>', // REQUIRED
    'versions' => ['<string>', ...], // REQUIRED
]);

Parameter Details

Result Syntax

[
    'errors' => [
        [
            'message' => '<string>',
            'versionName' => '<string>',
        ],
        // ...
    ],
]

Result Details

Errors

InternalServerException:

An unexpected error occurred. Try the request again.

ThrottlingException:

The request was denied due to request throttling.

ValidationException:

The input fails to satisfy the constraints specified by an AWS service.

ConflictException:

The request cannot be applied to the target resource in its current state.

ResourceNotFoundException:

The target resource was not found in the current Region.

AccessDeniedException:

You do not have sufficient access to perform this action.

DeleteReference

$result = $client->deleteReference([/* ... */]);
$promise = $client->deleteReferenceAsync([/* ... */]);

Deletes a genome reference.

Parameter Syntax

$result = $client->deleteReference([
    'id' => '<string>', // REQUIRED
    'referenceStoreId' => '<string>', // REQUIRED
]);

Parameter Details

Result Syntax

[]

Result Details

Errors

InternalServerException:

An unexpected error occurred. Try the request again.

ThrottlingException:

The request was denied due to request throttling.

ValidationException:

The input fails to satisfy the constraints specified by an AWS service.

ConflictException:

The request cannot be applied to the target resource in its current state.

ResourceNotFoundException:

The target resource was not found in the current Region.

AccessDeniedException:

You do not have sufficient access to perform this action.

RequestTimeoutException:

The request timed out.

DeleteReferenceStore

$result = $client->deleteReferenceStore([/* ... */]);
$promise = $client->deleteReferenceStoreAsync([/* ... */]);

Deletes a genome reference store.

Parameter Syntax

$result = $client->deleteReferenceStore([
    'id' => '<string>', // REQUIRED
]);

Parameter Details

Result Syntax

[]

Result Details

Errors

InternalServerException:

An unexpected error occurred. Try the request again.

ThrottlingException:

The request was denied due to request throttling.

ValidationException:

The input fails to satisfy the constraints specified by an AWS service.

ConflictException:

The request cannot be applied to the target resource in its current state.

ResourceNotFoundException:

The target resource was not found in the current Region.

AccessDeniedException:

You do not have sufficient access to perform this action.

RequestTimeoutException:

The request timed out.

DeleteRun

$result = $client->deleteRun([/* ... */]);
$promise = $client->deleteRunAsync([/* ... */]);

Deletes a workflow run.

Parameter Syntax

$result = $client->deleteRun([
    'id' => '<string>', // REQUIRED
]);

Parameter Details

Result Syntax

[]

Result Details

Errors

InternalServerException:

An unexpected error occurred. Try the request again.

ServiceQuotaExceededException:

The request exceeds a service quota.

ThrottlingException:

The request was denied due to request throttling.

ValidationException:

The input fails to satisfy the constraints specified by an AWS service.

ConflictException:

The request cannot be applied to the target resource in its current state.

ResourceNotFoundException:

The target resource was not found in the current Region.

AccessDeniedException:

You do not have sufficient access to perform this action.

RequestTimeoutException:

The request timed out.

DeleteRunCache

$result = $client->deleteRunCache([/* ... */]);
$promise = $client->deleteRunCacheAsync([/* ... */]);

Delete a run cache. This action removes the cache metadata stored in the service account, but doesn't delete the data in Amazon S3. You can access the cache data in Amazon S3, for inspection or to troubleshoot issues. You can remove old cache data using standard S3 Delete operations.

For more information, see Deleting a run cache in the AWS HealthOmics User Guide.

Parameter Syntax

$result = $client->deleteRunCache([
    'id' => '<string>', // REQUIRED
]);

Parameter Details

Result Syntax

[]

Result Details

Errors

InternalServerException:

An unexpected error occurred. Try the request again.

ServiceQuotaExceededException:

The request exceeds a service quota.

ThrottlingException:

The request was denied due to request throttling.

ValidationException:

The input fails to satisfy the constraints specified by an AWS service.

ConflictException:

The request cannot be applied to the target resource in its current state.

ResourceNotFoundException:

The target resource was not found in the current Region.

AccessDeniedException:

You do not have sufficient access to perform this action.

RequestTimeoutException:

The request timed out.

DeleteRunGroup

$result = $client->deleteRunGroup([/* ... */]);
$promise = $client->deleteRunGroupAsync([/* ... */]);

Deletes a workflow run group.

Parameter Syntax

$result = $client->deleteRunGroup([
    'id' => '<string>', // REQUIRED
]);

Parameter Details

Result Syntax

[]

Result Details

Errors

InternalServerException:

An unexpected error occurred. Try the request again.

ServiceQuotaExceededException:

The request exceeds a service quota.

ThrottlingException:

The request was denied due to request throttling.

ValidationException:

The input fails to satisfy the constraints specified by an AWS service.

ConflictException:

The request cannot be applied to the target resource in its current state.

ResourceNotFoundException:

The target resource was not found in the current Region.

AccessDeniedException:

You do not have sufficient access to perform this action.

RequestTimeoutException:

The request timed out.

DeleteS3AccessPolicy

$result = $client->deleteS3AccessPolicy([/* ... */]);
$promise = $client->deleteS3AccessPolicyAsync([/* ... */]);

Deletes an access policy for the specified store.

Parameter Syntax

$result = $client->deleteS3AccessPolicy([
    's3AccessPointArn' => '<string>', // REQUIRED
]);

Parameter Details

Result Syntax

[]

Result Details

Errors

InternalServerException:

An unexpected error occurred. Try the request again.

NotSupportedOperationException:

The operation is not supported by Amazon Omics, or the API does not exist.

ThrottlingException:

The request was denied due to request throttling.

ValidationException:

The input fails to satisfy the constraints specified by an AWS service.

ResourceNotFoundException:

The target resource was not found in the current Region.

AccessDeniedException:

You do not have sufficient access to perform this action.

RequestTimeoutException:

The request timed out.

DeleteSequenceStore

$result = $client->deleteSequenceStore([/* ... */]);
$promise = $client->deleteSequenceStoreAsync([/* ... */]);

Deletes a sequence store.

Parameter Syntax

$result = $client->deleteSequenceStore([
    'id' => '<string>', // REQUIRED
]);

Parameter Details

Result Syntax

[]

Result Details

Errors

InternalServerException:

An unexpected error occurred. Try the request again.

ThrottlingException:

The request was denied due to request throttling.

ValidationException:

The input fails to satisfy the constraints specified by an AWS service.

ConflictException:

The request cannot be applied to the target resource in its current state.

ResourceNotFoundException:

The target resource was not found in the current Region.

AccessDeniedException:

You do not have sufficient access to perform this action.

RequestTimeoutException:

The request timed out.

DeleteShare

$result = $client->deleteShare([/* ... */]);
$promise = $client->deleteShareAsync([/* ... */]);

Deletes a resource share. If you are the resource owner, the subscriber will no longer have access to the shared resource. If you are the subscriber, this operation deletes your access to the share.

Parameter Syntax

$result = $client->deleteShare([
    'shareId' => '<string>', // REQUIRED
]);

Parameter Details

Result Syntax

[
    'status' => 'PENDING|ACTIVATING|ACTIVE|DELETING|DELETED|FAILED',
]

Result Details

Errors

InternalServerException:

An unexpected error occurred. Try the request again.

ServiceQuotaExceededException:

The request exceeds a service quota.

ThrottlingException:

The request was denied due to request throttling.

ValidationException:

The input fails to satisfy the constraints specified by an AWS service.

ConflictException:

The request cannot be applied to the target resource in its current state.

ResourceNotFoundException:

The target resource was not found in the current Region.

AccessDeniedException:

You do not have sufficient access to perform this action.

DeleteVariantStore

$result = $client->deleteVariantStore([/* ... */]);
$promise = $client->deleteVariantStoreAsync([/* ... */]);

Deletes a variant store.

Parameter Syntax

$result = $client->deleteVariantStore([
    'force' => true || false,
    'name' => '<string>', // REQUIRED
]);

Parameter Details

Result Syntax

[
    'status' => 'CREATING|UPDATING|DELETING|ACTIVE|FAILED',
]

Result Details

Errors

InternalServerException:

An unexpected error occurred. Try the request again.

ThrottlingException:

The request was denied due to request throttling.

ValidationException:

The input fails to satisfy the constraints specified by an AWS service.

ConflictException:

The request cannot be applied to the target resource in its current state.

ResourceNotFoundException:

The target resource was not found in the current Region.

AccessDeniedException:

You do not have sufficient access to perform this action.

DeleteWorkflow

$result = $client->deleteWorkflow([/* ... */]);
$promise = $client->deleteWorkflowAsync([/* ... */]);

Deletes a workflow.

Parameter Syntax

$result = $client->deleteWorkflow([
    'id' => '<string>', // REQUIRED
]);

Parameter Details

Result Syntax

[]

Result Details

Errors

InternalServerException:

An unexpected error occurred. Try the request again.

ServiceQuotaExceededException:

The request exceeds a service quota.

ThrottlingException:

The request was denied due to request throttling.

ValidationException:

The input fails to satisfy the constraints specified by an AWS service.

ConflictException:

The request cannot be applied to the target resource in its current state.

ResourceNotFoundException:

The target resource was not found in the current Region.

AccessDeniedException:

You do not have sufficient access to perform this action.

RequestTimeoutException:

The request timed out.

GetAnnotationImportJob

$result = $client->getAnnotationImportJob([/* ... */]);
$promise = $client->getAnnotationImportJobAsync([/* ... */]);

Gets information about an annotation import job.

Parameter Syntax

$result = $client->getAnnotationImportJob([
    'jobId' => '<string>', // REQUIRED
]);

Parameter Details

Result Syntax

[
    'annotationFields' => ['<string>', ...],
    'completionTime' => <DateTime>,
    'creationTime' => <DateTime>,
    'destinationName' => '<string>',
    'formatOptions' => [
        'tsvOptions' => [
            'readOptions' => [
                'comment' => '<string>',
                'encoding' => '<string>',
                'escape' => '<string>',
                'escapeQuotes' => true || false,
                'header' => true || false,
                'lineSep' => '<string>',
                'quote' => '<string>',
                'quoteAll' => true || false,
                'sep' => '<string>',
            ],
        ],
        'vcfOptions' => [
            'ignoreFilterField' => true || false,
            'ignoreQualField' => true || false,
        ],
    ],
    'id' => '<string>',
    'items' => [
        [
            'jobStatus' => 'SUBMITTED|IN_PROGRESS|CANCELLED|COMPLETED|FAILED|COMPLETED_WITH_FAILURES',
            'source' => '<string>',
        ],
        // ...
    ],
    'roleArn' => '<string>',
    'runLeftNormalization' => true || false,
    'status' => 'SUBMITTED|IN_PROGRESS|CANCELLED|COMPLETED|FAILED|COMPLETED_WITH_FAILURES',
    'statusMessage' => '<string>',
    'updateTime' => <DateTime>,
    'versionName' => '<string>',
]

Result Details

Errors

InternalServerException:

An unexpected error occurred. Try the request again.

ThrottlingException:

The request was denied due to request throttling.

ValidationException:

The input fails to satisfy the constraints specified by an AWS service.

ResourceNotFoundException:

The target resource was not found in the current Region.

AccessDeniedException:

You do not have sufficient access to perform this action.

GetAnnotationStore

$result = $client->getAnnotationStore([/* ... */]);
$promise = $client->getAnnotationStoreAsync([/* ... */]);

Gets information about an annotation store.

Parameter Syntax

$result = $client->getAnnotationStore([
    'name' => '<string>', // REQUIRED
]);

Parameter Details

Result Syntax

[
    'creationTime' => <DateTime>,
    'description' => '<string>',
    'id' => '<string>',
    'name' => '<string>',
    'numVersions' => <integer>,
    'reference' => [
        'referenceArn' => '<string>',
    ],
    'sseConfig' => [
        'keyArn' => '<string>',
        'type' => 'KMS',
    ],
    'status' => 'CREATING|UPDATING|DELETING|ACTIVE|FAILED',
    'statusMessage' => '<string>',
    'storeArn' => '<string>',
    'storeFormat' => 'GFF|TSV|VCF',
    'storeOptions' => [
        'tsvStoreOptions' => [
            'annotationType' => 'GENERIC|CHR_POS|CHR_POS_REF_ALT|CHR_START_END_ONE_BASE|CHR_START_END_REF_ALT_ONE_BASE|CHR_START_END_ZERO_BASE|CHR_START_END_REF_ALT_ZERO_BASE',
            'formatToHeader' => ['<string>', ...],
            'schema' => [
                ['<string>', ...],
                // ...
            ],
        ],
    ],
    'storeSizeBytes' => <integer>,
    'tags' => ['<string>', ...],
    'updateTime' => <DateTime>,
]

Result Details

Errors

InternalServerException:

An unexpected error occurred. Try the request again.

ThrottlingException:

The request was denied due to request throttling.

ValidationException:

The input fails to satisfy the constraints specified by an AWS service.

ResourceNotFoundException:

The target resource was not found in the current Region.

AccessDeniedException:

You do not have sufficient access to perform this action.

GetAnnotationStoreVersion

$result = $client->getAnnotationStoreVersion([/* ... */]);
$promise = $client->getAnnotationStoreVersionAsync([/* ... */]);

Retrieves the metadata for an annotation store version.

Parameter Syntax

$result = $client->getAnnotationStoreVersion([
    'name' => '<string>', // REQUIRED
    'versionName' => '<string>', // REQUIRED
]);

Parameter Details

Result Syntax

[
    'creationTime' => <DateTime>,
    'description' => '<string>',
    'id' => '<string>',
    'name' => '<string>',
    'status' => 'CREATING|UPDATING|DELETING|ACTIVE|FAILED',
    'statusMessage' => '<string>',
    'storeId' => '<string>',
    'tags' => ['<string>', ...],
    'updateTime' => <DateTime>,
    'versionArn' => '<string>',
    'versionName' => '<string>',
    'versionOptions' => [
        'tsvVersionOptions' => [
            'annotationType' => 'GENERIC|CHR_POS|CHR_POS_REF_ALT|CHR_START_END_ONE_BASE|CHR_START_END_REF_ALT_ONE_BASE|CHR_START_END_ZERO_BASE|CHR_START_END_REF_ALT_ZERO_BASE',
            'formatToHeader' => ['<string>', ...],
            'schema' => [
                ['<string>', ...],
                // ...
            ],
        ],
    ],
    'versionSizeBytes' => <integer>,
]

Result Details

Errors

InternalServerException:

An unexpected error occurred. Try the request again.

ThrottlingException:

The request was denied due to request throttling.

ValidationException:

The input fails to satisfy the constraints specified by an AWS service.

ResourceNotFoundException:

The target resource was not found in the current Region.

AccessDeniedException:

You do not have sufficient access to perform this action.

GetReadSet

$result = $client->getReadSet([/* ... */]);
$promise = $client->getReadSetAsync([/* ... */]);

Gets a file from a read set.

Parameter Syntax

$result = $client->getReadSet([
    'file' => 'SOURCE1|SOURCE2|INDEX',
    'id' => '<string>', // REQUIRED
    'partNumber' => <integer>, // REQUIRED
    'sequenceStoreId' => '<string>', // REQUIRED
]);

Parameter Details

Result Syntax

[
    'payload' => <string || resource || Psr\Http\Message\StreamInterface>,
]

Result Details

Errors

InternalServerException:

An unexpected error occurred. Try the request again.

RangeNotSatisfiableException:

The ranges specified in the request are not valid.

ThrottlingException:

The request was denied due to request throttling.

ValidationException:

The input fails to satisfy the constraints specified by an AWS service.

ConflictException:

The request cannot be applied to the target resource in its current state.

ResourceNotFoundException:

The target resource was not found in the current Region.

AccessDeniedException:

You do not have sufficient access to perform this action.

RequestTimeoutException:

The request timed out.

GetReadSetActivationJob

$result = $client->getReadSetActivationJob([/* ... */]);
$promise = $client->getReadSetActivationJobAsync([/* ... */]);

Gets information about a read set activation job.

Parameter Syntax

$result = $client->getReadSetActivationJob([
    'id' => '<string>', // REQUIRED
    'sequenceStoreId' => '<string>', // REQUIRED
]);

Parameter Details

Result Syntax

[
    'completionTime' => <DateTime>,
    'creationTime' => <DateTime>,
    'id' => '<string>',
    'sequenceStoreId' => '<string>',
    'sources' => [
        [
            'readSetId' => '<string>',
            'status' => 'NOT_STARTED|IN_PROGRESS|FINISHED|FAILED',
            'statusMessage' => '<string>',
        ],
        // ...
    ],
    'status' => 'SUBMITTED|IN_PROGRESS|CANCELLING|CANCELLED|FAILED|COMPLETED|COMPLETED_WITH_FAILURES',
    'statusMessage' => '<string>',
]

Result Details

Errors

InternalServerException:

An unexpected error occurred. Try the request again.

ThrottlingException:

The request was denied due to request throttling.

ValidationException:

The input fails to satisfy the constraints specified by an AWS service.

ResourceNotFoundException:

The target resource was not found in the current Region.

AccessDeniedException:

You do not have sufficient access to perform this action.

RequestTimeoutException:

The request timed out.

GetReadSetExportJob

$result = $client->getReadSetExportJob([/* ... */]);
$promise = $client->getReadSetExportJobAsync([/* ... */]);

Gets information about a read set export job.

Parameter Syntax

$result = $client->getReadSetExportJob([
    'id' => '<string>', // REQUIRED
    'sequenceStoreId' => '<string>', // REQUIRED
]);

Parameter Details

Result Syntax

[
    'completionTime' => <DateTime>,
    'creationTime' => <DateTime>,
    'destination' => '<string>',
    'id' => '<string>',
    'readSets' => [
        [
            'id' => '<string>',
            'status' => 'NOT_STARTED|IN_PROGRESS|FINISHED|FAILED',
            'statusMessage' => '<string>',
        ],
        // ...
    ],
    'sequenceStoreId' => '<string>',
    'status' => 'SUBMITTED|IN_PROGRESS|CANCELLING|CANCELLED|FAILED|COMPLETED|COMPLETED_WITH_FAILURES',
    'statusMessage' => '<string>',
]

Result Details

Errors

InternalServerException:

An unexpected error occurred. Try the request again.

ThrottlingException:

The request was denied due to request throttling.

ValidationException:

The input fails to satisfy the constraints specified by an AWS service.

ResourceNotFoundException:

The target resource was not found in the current Region.

AccessDeniedException:

You do not have sufficient access to perform this action.

RequestTimeoutException:

The request timed out.

GetReadSetImportJob

$result = $client->getReadSetImportJob([/* ... */]);
$promise = $client->getReadSetImportJobAsync([/* ... */]);

Gets information about a read set import job.

Parameter Syntax

$result = $client->getReadSetImportJob([
    'id' => '<string>', // REQUIRED
    'sequenceStoreId' => '<string>', // REQUIRED
]);

Parameter Details

Result Syntax

[
    'completionTime' => <DateTime>,
    'creationTime' => <DateTime>,
    'id' => '<string>',
    'roleArn' => '<string>',
    'sequenceStoreId' => '<string>',
    'sources' => [
        [
            'description' => '<string>',
            'generatedFrom' => '<string>',
            'name' => '<string>',
            'readSetId' => '<string>',
            'referenceArn' => '<string>',
            'sampleId' => '<string>',
            'sourceFileType' => 'FASTQ|BAM|CRAM|UBAM',
            'sourceFiles' => [
                'source1' => '<string>',
                'source2' => '<string>',
            ],
            'status' => 'NOT_STARTED|IN_PROGRESS|FINISHED|FAILED',
            'statusMessage' => '<string>',
            'subjectId' => '<string>',
            'tags' => ['<string>', ...],
        ],
        // ...
    ],
    'status' => 'SUBMITTED|IN_PROGRESS|CANCELLING|CANCELLED|FAILED|COMPLETED|COMPLETED_WITH_FAILURES',
    'statusMessage' => '<string>',
]

Result Details

Errors

InternalServerException:

An unexpected error occurred. Try the request again.

ThrottlingException:

The request was denied due to request throttling.

ValidationException:

The input fails to satisfy the constraints specified by an AWS service.

ResourceNotFoundException:

The target resource was not found in the current Region.

AccessDeniedException:

You do not have sufficient access to perform this action.

RequestTimeoutException:

The request timed out.

GetReadSetMetadata

$result = $client->getReadSetMetadata([/* ... */]);
$promise = $client->getReadSetMetadataAsync([/* ... */]);

Gets details about a read set.

Parameter Syntax

$result = $client->getReadSetMetadata([
    'id' => '<string>', // REQUIRED
    'sequenceStoreId' => '<string>', // REQUIRED
]);

Parameter Details

Result Syntax

[
    'arn' => '<string>',
    'creationJobId' => '<string>',
    'creationTime' => <DateTime>,
    'creationType' => 'IMPORT|UPLOAD',
    'description' => '<string>',
    'etag' => [
        'algorithm' => 'FASTQ_MD5up|BAM_MD5up|CRAM_MD5up|FASTQ_SHA256up|BAM_SHA256up|CRAM_SHA256up|FASTQ_SHA512up|BAM_SHA512up|CRAM_SHA512up',
        'source1' => '<string>',
        'source2' => '<string>',
    ],
    'fileType' => 'FASTQ|BAM|CRAM|UBAM',
    'files' => [
        'index' => [
            'contentLength' => <integer>,
            'partSize' => <integer>,
            's3Access' => [
                's3Uri' => '<string>',
            ],
            'totalParts' => <integer>,
        ],
        'source1' => [
            'contentLength' => <integer>,
            'partSize' => <integer>,
            's3Access' => [
                's3Uri' => '<string>',
            ],
            'totalParts' => <integer>,
        ],
        'source2' => [
            'contentLength' => <integer>,
            'partSize' => <integer>,
            's3Access' => [
                's3Uri' => '<string>',
            ],
            'totalParts' => <integer>,
        ],
    ],
    'id' => '<string>',
    'name' => '<string>',
    'referenceArn' => '<string>',
    'sampleId' => '<string>',
    'sequenceInformation' => [
        'alignment' => '<string>',
        'generatedFrom' => '<string>',
        'totalBaseCount' => <integer>,
        'totalReadCount' => <integer>,
    ],
    'sequenceStoreId' => '<string>',
    'status' => 'ARCHIVED|ACTIVATING|ACTIVE|DELETING|DELETED|PROCESSING_UPLOAD|UPLOAD_FAILED',
    'statusMessage' => '<string>',
    'subjectId' => '<string>',
]

Result Details

Errors

InternalServerException:

An unexpected error occurred. Try the request again.

ThrottlingException:

The request was denied due to request throttling.

ValidationException:

The input fails to satisfy the constraints specified by an AWS service.

ResourceNotFoundException:

The target resource was not found in the current Region.

AccessDeniedException:

You do not have sufficient access to perform this action.

RequestTimeoutException:

The request timed out.

GetReference

$result = $client->getReference([/* ... */]);
$promise = $client->getReferenceAsync([/* ... */]);

Gets a reference file.

Parameter Syntax

$result = $client->getReference([
    'file' => 'SOURCE|INDEX',
    'id' => '<string>', // REQUIRED
    'partNumber' => <integer>, // REQUIRED
    'range' => '<string>',
    'referenceStoreId' => '<string>', // REQUIRED
]);

Parameter Details

Result Syntax

[
    'payload' => <string || resource || Psr\Http\Message\StreamInterface>,
]

Result Details

Errors

InternalServerException:

An unexpected error occurred. Try the request again.

RangeNotSatisfiableException:

The ranges specified in the request are not valid.

ThrottlingException:

The request was denied due to request throttling.

ValidationException:

The input fails to satisfy the constraints specified by an AWS service.

ResourceNotFoundException:

The target resource was not found in the current Region.

AccessDeniedException:

You do not have sufficient access to perform this action.

RequestTimeoutException:

The request timed out.

GetReferenceImportJob

$result = $client->getReferenceImportJob([/* ... */]);
$promise = $client->getReferenceImportJobAsync([/* ... */]);

Gets information about a reference import job.

Parameter Syntax

$result = $client->getReferenceImportJob([
    'id' => '<string>', // REQUIRED
    'referenceStoreId' => '<string>', // REQUIRED
]);

Parameter Details

Result Syntax

[
    'completionTime' => <DateTime>,
    'creationTime' => <DateTime>,
    'id' => '<string>',
    'referenceStoreId' => '<string>',
    'roleArn' => '<string>',
    'sources' => [
        [
            'description' => '<string>',
            'name' => '<string>',
            'referenceId' => '<string>',
            'sourceFile' => '<string>',
            'status' => 'NOT_STARTED|IN_PROGRESS|FINISHED|FAILED',
            'statusMessage' => '<string>',
            'tags' => ['<string>', ...],
        ],
        // ...
    ],
    'status' => 'SUBMITTED|IN_PROGRESS|CANCELLING|CANCELLED|FAILED|COMPLETED|COMPLETED_WITH_FAILURES',
    'statusMessage' => '<string>',
]

Result Details

Errors

InternalServerException:

An unexpected error occurred. Try the request again.

ThrottlingException:

The request was denied due to request throttling.

ValidationException:

The input fails to satisfy the constraints specified by an AWS service.

ResourceNotFoundException:

The target resource was not found in the current Region.

AccessDeniedException:

You do not have sufficient access to perform this action.

RequestTimeoutException:

The request timed out.

GetReferenceMetadata

$result = $client->getReferenceMetadata([/* ... */]);
$promise = $client->getReferenceMetadataAsync([/* ... */]);

Gets information about a genome reference's metadata.

Parameter Syntax

$result = $client->getReferenceMetadata([
    'id' => '<string>', // REQUIRED
    'referenceStoreId' => '<string>', // REQUIRED
]);

Parameter Details

Result Syntax

[
    'arn' => '<string>',
    'creationJobId' => '<string>',
    'creationTime' => <DateTime>,
    'creationType' => 'IMPORT',
    'description' => '<string>',
    'files' => [
        'index' => [
            'contentLength' => <integer>,
            'partSize' => <integer>,
            's3Access' => [
                's3Uri' => '<string>',
            ],
            'totalParts' => <integer>,
        ],
        'source' => [
            'contentLength' => <integer>,
            'partSize' => <integer>,
            's3Access' => [
                's3Uri' => '<string>',
            ],
            'totalParts' => <integer>,
        ],
    ],
    'id' => '<string>',
    'md5' => '<string>',
    'name' => '<string>',
    'referenceStoreId' => '<string>',
    'status' => 'ACTIVE|DELETING|DELETED',
    'updateTime' => <DateTime>,
]

Result Details

Errors

InternalServerException:

An unexpected error occurred. Try the request again.

ThrottlingException:

The request was denied due to request throttling.

ValidationException:

The input fails to satisfy the constraints specified by an AWS service.

ResourceNotFoundException:

The target resource was not found in the current Region.

AccessDeniedException:

You do not have sufficient access to perform this action.

RequestTimeoutException:

The request timed out.

GetReferenceStore

$result = $client->getReferenceStore([/* ... */]);
$promise = $client->getReferenceStoreAsync([/* ... */]);

Gets information about a reference store.

Parameter Syntax

$result = $client->getReferenceStore([
    'id' => '<string>', // REQUIRED
]);

Parameter Details

Result Syntax

[
    'arn' => '<string>',
    'creationTime' => <DateTime>,
    'description' => '<string>',
    'id' => '<string>',
    'name' => '<string>',
    'sseConfig' => [
        'keyArn' => '<string>',
        'type' => 'KMS',
    ],
]

Result Details

Errors

InternalServerException:

An unexpected error occurred. Try the request again.

ThrottlingException:

The request was denied due to request throttling.

ValidationException:

The input fails to satisfy the constraints specified by an AWS service.

ResourceNotFoundException:

The target resource was not found in the current Region.

AccessDeniedException:

You do not have sufficient access to perform this action.

RequestTimeoutException:

The request timed out.

GetRun

$result = $client->getRun([/* ... */]);
$promise = $client->getRunAsync([/* ... */]);

Gets information about a workflow run.

If a workflow is shared with you, you cannot export information about the run.

HealthOmics stores a fixed number of runs that are available to the console and API. If GetRun doesn't return the requested run, you can find run logs for all runs in the CloudWatch logs. For more information about viewing the run logs, see CloudWatch logs in the AWS HealthOmics User Guide.

Parameter Syntax

$result = $client->getRun([
    'export' => ['<string>', ...],
    'id' => '<string>', // REQUIRED
]);

Parameter Details

Result Syntax

[
    'accelerators' => 'GPU',
    'arn' => '<string>',
    'cacheBehavior' => 'CACHE_ON_FAILURE|CACHE_ALWAYS',
    'cacheId' => '<string>',
    'creationTime' => <DateTime>,
    'definition' => '<string>',
    'digest' => '<string>',
    'engineVersion' => '<string>',
    'failureReason' => '<string>',
    'id' => '<string>',
    'logLevel' => 'OFF|FATAL|ERROR|ALL',
    'logLocation' => [
        'engineLogStream' => '<string>',
        'runLogStream' => '<string>',
    ],
    'name' => '<string>',
    'outputUri' => '<string>',
    'parameters' => [
    ],
    'priority' => <integer>,
    'resourceDigests' => ['<string>', ...],
    'retentionMode' => 'RETAIN|REMOVE',
    'roleArn' => '<string>',
    'runGroupId' => '<string>',
    'runId' => '<string>',
    'runOutputUri' => '<string>',
    'startTime' => <DateTime>,
    'startedBy' => '<string>',
    'status' => 'PENDING|STARTING|RUNNING|STOPPING|COMPLETED|DELETED|CANCELLED|FAILED',
    'statusMessage' => '<string>',
    'stopTime' => <DateTime>,
    'storageCapacity' => <integer>,
    'storageType' => 'STATIC|DYNAMIC',
    'tags' => ['<string>', ...],
    'uuid' => '<string>',
    'workflowId' => '<string>',
    'workflowOwnerId' => '<string>',
    'workflowType' => 'PRIVATE|READY2RUN',
]

Result Details

Errors

InternalServerException:

An unexpected error occurred. Try the request again.

ServiceQuotaExceededException:

The request exceeds a service quota.

ThrottlingException:

The request was denied due to request throttling.

ValidationException:

The input fails to satisfy the constraints specified by an AWS service.

ConflictException:

The request cannot be applied to the target resource in its current state.

ResourceNotFoundException:

The target resource was not found in the current Region.

AccessDeniedException:

You do not have sufficient access to perform this action.

RequestTimeoutException:

The request timed out.

GetRunCache

$result = $client->getRunCache([/* ... */]);
$promise = $client->getRunCacheAsync([/* ... */]);

Retrieve the details for the specified run cache.

For more information, see Call caching for HealthOmics runs in the AWS HealthOmics User Guide.

Parameter Syntax

$result = $client->getRunCache([
    'id' => '<string>', // REQUIRED
]);

Parameter Details

Result Syntax

[
    'arn' => '<string>',
    'cacheBehavior' => 'CACHE_ON_FAILURE|CACHE_ALWAYS',
    'cacheBucketOwnerId' => '<string>',
    'cacheS3Uri' => '<string>',
    'creationTime' => <DateTime>,
    'description' => '<string>',
    'id' => '<string>',
    'name' => '<string>',
    'status' => 'ACTIVE|DELETED|FAILED',
    'tags' => ['<string>', ...],
]

Result Details

Errors

InternalServerException:

An unexpected error occurred. Try the request again.

ServiceQuotaExceededException:

The request exceeds a service quota.

ThrottlingException:

The request was denied due to request throttling.

ValidationException:

The input fails to satisfy the constraints specified by an AWS service.

ConflictException:

The request cannot be applied to the target resource in its current state.

ResourceNotFoundException:

The target resource was not found in the current Region.

AccessDeniedException:

You do not have sufficient access to perform this action.

RequestTimeoutException:

The request timed out.

GetRunGroup

$result = $client->getRunGroup([/* ... */]);
$promise = $client->getRunGroupAsync([/* ... */]);

Gets information about a workflow run group.

Parameter Syntax

$result = $client->getRunGroup([
    'id' => '<string>', // REQUIRED
]);

Parameter Details

Result Syntax

[
    'arn' => '<string>',
    'creationTime' => <DateTime>,
    'id' => '<string>',
    'maxCpus' => <integer>,
    'maxDuration' => <integer>,
    'maxGpus' => <integer>,
    'maxRuns' => <integer>,
    'name' => '<string>',
    'tags' => ['<string>', ...],
]

Result Details

Errors

InternalServerException:

An unexpected error occurred. Try the request again.

ServiceQuotaExceededException:

The request exceeds a service quota.

ThrottlingException:

The request was denied due to request throttling.

ValidationException:

The input fails to satisfy the constraints specified by an AWS service.

ConflictException:

The request cannot be applied to the target resource in its current state.

ResourceNotFoundException:

The target resource was not found in the current Region.

AccessDeniedException:

You do not have sufficient access to perform this action.

RequestTimeoutException:

The request timed out.

GetRunTask

$result = $client->getRunTask([/* ... */]);
$promise = $client->getRunTaskAsync([/* ... */]);

Gets information about a workflow run task.

Parameter Syntax

$result = $client->getRunTask([
    'id' => '<string>', // REQUIRED
    'taskId' => '<string>', // REQUIRED
]);

Parameter Details

Result Syntax

[
    'cacheHit' => true || false,
    'cacheS3Uri' => '<string>',
    'cpus' => <integer>,
    'creationTime' => <DateTime>,
    'failureReason' => '<string>',
    'gpus' => <integer>,
    'instanceType' => '<string>',
    'logStream' => '<string>',
    'memory' => <integer>,
    'name' => '<string>',
    'startTime' => <DateTime>,
    'status' => 'PENDING|STARTING|RUNNING|STOPPING|COMPLETED|CANCELLED|FAILED',
    'statusMessage' => '<string>',
    'stopTime' => <DateTime>,
    'taskId' => '<string>',
]

Result Details