Terjemahan disediakan oleh mesin penerjemah. Jika konten terjemahan yang diberikan bertentangan dengan versi bahasa Inggris aslinya, utamakan versi bahasa Inggris.
# HealthOmics contoh menggunakan AWS CLI
Contoh kode berikut menunjukkan cara melakukan tindakan dan mengimplementasikan skenario umum dengan menggunakan AWS Command Line Interface with HealthOmics.
*Tindakan* merupakan kutipan kode dari program yang lebih besar dan harus dijalankan dalam konteks. Sementara tindakan menunjukkan cara memanggil fungsi layanan individual, Anda dapat melihat tindakan dalam konteks dalam skenario terkait.
Setiap contoh menyertakan tautan ke kode sumber lengkap, di mana Anda dapat menemukan instruksi tentang cara mengatur dan menjalankan kode dalam konteks.
**Topics**
+ [Tindakan](#actions)
## Tindakan
### `abort-multipart-read-set-upload`
Contoh kode berikut menunjukkan cara menggunakan`abort-multipart-read-set-upload`.
**AWS CLI**
**Untuk menghentikan unggahan set baca multibagian**
`abort-multipart-read-set-upload`Contoh berikut menghentikan unggahan set baca multibagian ke toko HealthOmics urutan Anda.
```
aws omics abort-multipart-read-set-upload \
--sequence-store-id 0123456789 \
--upload-id 1122334455
```
Perintah ini tidak menghasilkan output.
Untuk informasi selengkapnya, lihat [Unggahan langsung ke penyimpanan urutan](https://docs.aws.amazon.com/omics/latest/dev/synchronous-uploads.html) di *Panduan AWS HealthOmics Pengguna*.
+ Untuk detail API, lihat [AbortMultipartReadSetUpload](https://awscli.amazonaws.com/v2/documentation/api/latest/reference/omics/abort-multipart-read-set-upload.html)di *Referensi AWS CLI Perintah*.
### `accept-share`
Contoh kode berikut menunjukkan cara menggunakan`accept-share`.
**AWS CLI**
**Untuk menerima bagian data penyimpanan analitik**
`accept-share`Contoh berikut menerima bagian data penyimpanan HealthOmics analitik.
```
aws omics accept-share \
----share-id "495c21bedc889d07d0ab69d710a6841e-dd75ab7a1a9c384fa848b5bd8e5a7e0a"
```
Output:
```
{
"status": "ACTIVATING"
}
```
Untuk informasi selengkapnya, lihat [Berbagi lintas akun](https://docs.aws.amazon.com/omics/latest/dev/cross-account-sharing.html) di *Panduan AWS HealthOmics Pengguna*.
+ Untuk detail API, lihat [AcceptShare](https://awscli.amazonaws.com/v2/documentation/api/latest/reference/omics/accept-share.html)di *Referensi AWS CLI Perintah*.
### `batch-delete-read-set`
Contoh kode berikut menunjukkan cara menggunakan`batch-delete-read-set`.
**AWS CLI**
**Untuk menghapus beberapa set baca**
`batch-delete-read-set`Contoh berikut menghapus dua set baca.
```
aws omics batch-delete-read-set \
--sequence-store-id 1234567890 \
--ids 1234567890 0123456789
```
Jika ada kesalahan menghapus salah satu set baca yang ditentukan, layanan mengembalikan daftar kesalahan.
```
{
"errors": [
{
"code": "",
"id": "0123456789",
"message": "The specified readset does not exist."
}
]
}
```
Untuk informasi selengkapnya, lihat [Penyimpanan Omics](https://docs.aws.amazon.com/omics/latest/dev/sequence-stores.html) di Panduan *Pengembang Amazon Omics*.
+ Untuk detail API, lihat [BatchDeleteReadSet](https://awscli.amazonaws.com/v2/documentation/api/latest/reference/omics/batch-delete-read-set.html)di *Referensi AWS CLI Perintah*.
### `cancel-annotation-import-job`
Contoh kode berikut menunjukkan cara menggunakan`cancel-annotation-import-job`.
**AWS CLI**
**Untuk membatalkan pekerjaan impor anotasi**
`cancel-annotation-import-job`Contoh berikut membatalkan pekerjaan impor anotasi dengan ID. `04f57618-xmpl-4fd0-9349-e5a85aefb997`
```
aws omics cancel-annotation-import-job \
--job-id 04f57618-xmpl-4fd0-9349-e5a85aefb997
```
Untuk informasi selengkapnya, lihat [Omics Analytics](https://docs.aws.amazon.com/omics/latest/dev/omics-analytics.html) di Panduan *Pengembang Amazon Omics*.
+ Untuk detail API, lihat [CancelAnnotationImportJob](https://awscli.amazonaws.com/v2/documentation/api/latest/reference/omics/cancel-annotation-import-job.html)di *Referensi AWS CLI Perintah*.
### `cancel-run`
Contoh kode berikut menunjukkan cara menggunakan`cancel-run`.
**AWS CLI**
**Untuk membatalkan proses**
`cancel-run`Contoh berikut membatalkan run dengan ID`1234567`.
```
aws omics cancel-run \
--id 1234567
```
*Untuk informasi selengkapnya, lihat [Menjalankan siklus hidup dalam alur kerja di Panduan](https://docs.aws.amazon.com/omics/latest/dev/monitoring-runs.html) Pengguna.AWS HealthOmics *
+ Untuk detail API, lihat [CancelRun](https://awscli.amazonaws.com/v2/documentation/api/latest/reference/omics/cancel-run.html)di *Referensi AWS CLI Perintah*.
### `cancel-variant-import-job`
Contoh kode berikut menunjukkan cara menggunakan`cancel-variant-import-job`.
**AWS CLI**
**Untuk membatalkan pekerjaan impor varian**
`cancel-variant-import-job`Contoh berikut membatalkan pekerjaan impor varian dengan ID`69cb65d6-xmpl-4a4a-9025-4565794b684e`.
```
aws omics cancel-variant-import-job \
--job-id 69cb65d6-xmpl-4a4a-9025-4565794b684e
```
Untuk informasi selengkapnya, lihat [Omics Analytics](https://docs.aws.amazon.com/omics/latest/dev/omics-analytics.html) di Panduan *Pengembang Amazon Omics*.
+ Untuk detail API, lihat [CancelVariantImportJob](https://awscli.amazonaws.com/v2/documentation/api/latest/reference/omics/cancel-variant-import-job.html)di *Referensi AWS CLI Perintah*.
### `complete-multipart-read-set-upload`
Contoh kode berikut menunjukkan cara menggunakan`complete-multipart-read-set-upload`.
**AWS CLI**
**Untuk mengakhiri unggahan multipart setelah Anda mengunggah semua komponen.**
`complete-multipart-read-set-upload`Contoh berikut menyimpulkan upload multipart ke dalam toko urutan setelah semua komponen telah diunggah.
```
aws omics complete-multipart-read-set-upload \
--sequence-store-id 0123456789 \
--upload-id 1122334455 \
--parts '[{"checksum":"gaCBQMe+rpCFZxLpoP6gydBoXaKKDA/Vobh5zBDb4W4=","partNumber":1,"partSource":"SOURCE1"}]'
```
Output:
```
{
"readSetId": "0000000001"
"readSetId": "0000000002"
"readSetId": "0000000003"
}
```
Untuk informasi selengkapnya, lihat [Unggahan langsung ke penyimpanan urutan](https://docs.aws.amazon.com/omics/latest/dev/synchronous-uploads.html) di *Panduan AWS HealthOmics Pengguna*.
+ Untuk detail API, lihat [CompleteMultipartReadSetUpload](https://awscli.amazonaws.com/v2/documentation/api/latest/reference/omics/complete-multipart-read-set-upload.html)di *Referensi AWS CLI Perintah*.
### `create-annotation-store-version`
Contoh kode berikut menunjukkan cara menggunakan`create-annotation-store-version`.
**AWS CLI**
**Untuk membuat versi baru dari toko anotasi**
`create-annotation-store-version`Contoh berikut membuat versi baru dari toko anotasi.
```
aws omics create-annotation-store-version \
--name my_annotation_store \
--version-name my_version
```
Output:
```
{
"creationTime": "2023-07-21T17:15:49.251040+00:00",
"id": "3b93cdef69d2",
"name": "my_annotation_store",
"reference": {
"referenceArn": "arn:aws:omics:us-west-2:555555555555:referenceStore/6505293348/reference/5987565360"
},
"status": "CREATING",
"versionName": "my_version"
}
```
Untuk informasi selengkapnya, lihat [Membuat versi baru penyimpanan anotasi](https://docs.aws.amazon.com/omics/latest/dev/annotation-store-versioning.html) di *Panduan AWS HealthOmics Pengguna*.
+ Untuk detail API, lihat [CreateAnnotationStoreVersion](https://awscli.amazonaws.com/v2/documentation/api/latest/reference/omics/create-annotation-store-version.html)di *Referensi AWS CLI Perintah*.
### `create-annotation-store`
Contoh kode berikut menunjukkan cara menggunakan`create-annotation-store`.
**AWS CLI**
**Contoh 1: Untuk membuat toko anotasi VCF**
`create-annotation-store`Contoh berikut membuat penyimpanan anotasi format VCF.
```
aws omics create-annotation-store \
--name my_ann_store \
--store-format VCF \
--reference referenceArn=arn:aws:omics:us-west-2:123456789012:referenceStore/1234567890/reference/1234567890
```
Output:
```
{
"creationTime": "2022-11-23T22:48:39.226492Z",
"id": "0a91xmplc71f",
"name": "my_ann_store",
"reference": {
"referenceArn": "arn:aws:omics:us-west-2:123456789012:referenceStore/1234567890/reference/1234567890"
},
"status": "CREATING",
"storeFormat": "VCF"
}
```
**Contoh 2: Untuk membuat toko anotasi TSV**
`create-annotation-store`Contoh berikut membuat penyimpanan anotasi format TSV.
```
aws omics create-annotation-store \
--name tsv_ann_store \
--store-format TSV \
--reference referenceArn=arn:aws:omics:us-west-2:123456789012:referenceStore/1234567890/reference/1234567890 \
--store-options file://tsv-store-options.json
```
`tsv-store-options.json`mengonfigurasi opsi format untuk anotasi.
```
{
"tsvStoreOptions": {
"annotationType": "CHR_START_END_ZERO_BASE",
"formatToHeader": {
"CHR": "chromosome",
"START": "start",
"END": "end"
},
"schema": [
{
"chromosome": "STRING"
},
{
"start": "LONG"
},
{
"end": "LONG"
},
{
"name": "STRING"
}
]
}
}
```
Output:
```
{
"creationTime": "2022-11-30T01:28:08.525586Z",
"id": "861cxmpl96b0",
"name": "tsv_ann_store",
"reference": {
"referenceArn": "arn:aws:omics:us-west-2:123456789012:referenceStore/1234567890/reference/1234567890"
},
"status": "CREATING",
"storeFormat": "TSV",
"storeOptions": {
"tsvStoreOptions": {
"annotationType": "CHR_START_END_ZERO_BASE",
"formatToHeader": {
"CHR": "chromosome",
"END": "end",
"START": "start"
},
"schema": [
{
"chromosome": "STRING"
},
{
"start": "LONG"
},
{
"end": "LONG"
},
{
"name": "STRING"
}
]
}
}
}
```
Untuk informasi selengkapnya, lihat [Omics Analytics](https://docs.aws.amazon.com/omics/latest/dev/omics-analytics.html) di Panduan Pengembang Amazon Omics.
+ Untuk detail API, lihat [CreateAnnotationStore](https://awscli.amazonaws.com/v2/documentation/api/latest/reference/omics/create-annotation-store.html)di *Referensi AWS CLI Perintah*.
### `create-multipart-read-set-upload`
Contoh kode berikut menunjukkan cara menggunakan`create-multipart-read-set-upload`.
**AWS CLI**
**Untuk memulai unggahan set baca multibagian.**
`create-multipart-read-set-upload`Contoh berikut memulai upload set baca multipart.
```
aws omics create-multipart-read-set-upload \
--sequence-store-id 0123456789 \
--name HG00146 \
--source-file-type FASTQ \
--subject-id mySubject\
--sample-id mySample\
--description "FASTQ for HG00146"\
--generated-from "1000 Genomes"
```
Output:
```
{
"creationTime": "2022-07-13T23:25:20Z",
"description": "FASTQ for HG00146",
"generatedFrom": "1000 Genomes",
"name": "HG00146",
"sampleId": "mySample",
"sequenceStoreId": "0123456789",
"sourceFileType": "FASTQ",
"subjectId": "mySubject",
"uploadId": "1122334455"
}
```
Untuk informasi selengkapnya, lihat [Unggahan langsung ke penyimpanan urutan](https://docs.aws.amazon.com/omics/latest/dev/synchronous-uploads.html) di *Panduan AWS HealthOmics Pengguna*.
+ Untuk detail API, lihat [CreateMultipartReadSetUpload](https://awscli.amazonaws.com/v2/documentation/api/latest/reference/omics/create-multipart-read-set-upload.html)di *Referensi AWS CLI Perintah*.
### `create-reference-store`
Contoh kode berikut menunjukkan cara menggunakan`create-reference-store`.
**AWS CLI**
**Untuk membuat toko referensi**
`create-reference-store`Contoh berikut membuat toko referensi`my-ref-store`.
```
aws omics create-reference-store \
--name my-ref-store
```
Output:
```
{
"arn": "arn:aws:omics:us-west-2:123456789012:referenceStore/1234567890",
"creationTime": "2022-11-22T22:13:25.947Z",
"id": "1234567890",
"name": "my-ref-store"
}
```
Untuk informasi selengkapnya, lihat [Penyimpanan Omics](https://docs.aws.amazon.com/omics/latest/dev/sequence-stores.html) di Panduan *Pengembang Amazon Omics*.
+ Untuk detail API, lihat [CreateReferenceStore](https://awscli.amazonaws.com/v2/documentation/api/latest/reference/omics/create-reference-store.html)di *Referensi AWS CLI Perintah*.
### `create-run-group`
Contoh kode berikut menunjukkan cara menggunakan`create-run-group`.
**AWS CLI**
**Untuk membuat grup run**
`create-run-group`Contoh berikut membuat grup run bernama`cram-converter`.
```
aws omics create-run-group \
--name cram-converter \
--max-cpus 20 \
--max-gpus 10 \
--max-duration 600 \
--max-runs 5
```
Output:
```
{
"arn": "arn:aws:omics:us-west-2:123456789012:runGroup/1234567",
"id": "1234567",
"tags": {}
}
```
Untuk informasi selengkapnya, lihat [Membuat grup yang dijalankan](https://docs.aws.amazon.com/omics/latest/dev/creating-run-groups.html) di *Panduan AWS HealthOmics Pengguna*.
+ Untuk detail API, lihat [CreateRunGroup](https://awscli.amazonaws.com/v2/documentation/api/latest/reference/omics/create-run-group.html)di *Referensi AWS CLI Perintah*.
### `create-sequence-store`
Contoh kode berikut menunjukkan cara menggunakan`create-sequence-store`.
**AWS CLI**
**Untuk membuat toko urutan**
`create-sequence-store`Contoh berikut membuat toko urutan.
```
aws omics create-sequence-store \
--name my-seq-store
```
Output:
```
{
"arn": "arn:aws:omics:us-west-2:123456789012:sequenceStore/1234567890",
"creationTime": "2022-11-23T01:24:33.629Z",
"id": "1234567890",
"name": "my-seq-store"
}
```
Untuk informasi selengkapnya, lihat [Penyimpanan Omics](https://docs.aws.amazon.com/omics/latest/dev/sequence-stores.html) di Panduan *Pengembang Amazon Omics*.
+ Untuk detail API, lihat [CreateSequenceStore](https://awscli.amazonaws.com/v2/documentation/api/latest/reference/omics/create-sequence-store.html)di *Referensi AWS CLI Perintah*.
### `create-share`
Contoh kode berikut menunjukkan cara menggunakan`create-share`.
**AWS CLI**
**Untuk membuat bagian dari toko HealthOmics analitik**
`create-share`Contoh berikut menunjukkan cara membuat bagian dari toko HealthOmics analitik yang dapat diterima oleh pelanggan di luar akun.
```
aws omics create-share \
--resource-arn "arn:aws:omics:us-west-2:555555555555:variantStore/omics_dev_var_store" \
--principal-subscriber "123456789012" \
--name "my_Share-123"
```
Output:
```
{
"shareId": "495c21bedc889d07d0ab69d710a6841e-dd75ab7a1a9c384fa848b5bd8e5a7e0a",
"name": "my_Share-123",
"status": "PENDING"
}
```
*Untuk informasi selengkapnya, lihat [Berbagi lintas akun di Panduan](https://docs.aws.amazon.com/omics/latest/dev/cross-account-sharing.html) Pengguna.AWS HealthOmics *
+ Untuk detail API, lihat [CreateShare](https://awscli.amazonaws.com/v2/documentation/api/latest/reference/omics/create-share.html)di *Referensi AWS CLI Perintah*.
### `create-variant-store`
Contoh kode berikut menunjukkan cara menggunakan`create-variant-store`.
**AWS CLI**
**Untuk membuat toko varian**
`create-variant-store`Contoh berikut membuat toko varian bernama`my_var_store`.
```
aws omics create-variant-store \
--name my_var_store \
--reference referenceArn=arn:aws:omics:us-west-2:123456789012:referenceStore/1234567890/reference/1234567890
```
Output:
```
{
"creationTime": "2022-11-23T22:09:07.534499Z",
"id": "02dexmplcfdd",
"name": "my_var_store",
"reference": {
"referenceArn": "arn:aws:omics:us-west-2:123456789012:referenceStore/1234567890/reference/1234567890"
},
"status": "CREATING"
}
```
Untuk informasi selengkapnya, lihat [Omics Analytics](https://docs.aws.amazon.com/omics/latest/dev/omics-analytics.html) di Panduan *Pengembang Amazon Omics*.
+ Untuk detail API, lihat [CreateVariantStore](https://awscli.amazonaws.com/v2/documentation/api/latest/reference/omics/create-variant-store.html)di *Referensi AWS CLI Perintah*.
### `create-workflow`
Contoh kode berikut menunjukkan cara menggunakan`create-workflow`.
**AWS CLI**
**Untuk membuat alur kerja**
`create-workflow`Contoh berikut menciptakan alur kerja WDL.
```
aws omics create-workflow \
--name cram-converter \
--engine WDL \
--definition-zip fileb://workflow-crambam.zip \
--parameter-template file://workflow-params.json
```
`workflow-crambam.zip`adalah arsip ZIP yang berisi definisi alur kerja. `workflow-params.json`mendefinisikan parameter runtime untuk alur kerja.
```
{
"ref_fasta" : {
"description": "Reference genome fasta file",
"optional": false
},
"ref_fasta_index" : {
"description": "Index of the reference genome fasta file",
"optional": false
},
"ref_dict" : {
"description": "dictionary file for 'ref_fasta'",
"optional": false
},
"input_cram" : {
"description": "The Cram file to convert to BAM",
"optional": false
},
"sample_name" : {
"description": "The name of the input sample, used to name the output BAM",
"optional": false
}
}
```
Output:
```
{
"arn": "arn:aws:omics:us-west-2:123456789012:workflow/1234567",
"id": "1234567",
"status": "CREATING",
"tags": {}
}
```
Untuk informasi selengkapnya, lihat [Membuat alur kerja pribadi](https://docs.aws.amazon.com/omics/latest/dev/workflows-setup.html) di *Panduan AWS HealthOmics Pengguna*.
+ Untuk detail API, lihat [CreateWorkflow](https://awscli.amazonaws.com/v2/documentation/api/latest/reference/omics/create-workflow.html)di *Referensi AWS CLI Perintah*.
### `delete-annotation-store-versions`
Contoh kode berikut menunjukkan cara menggunakan`delete-annotation-store-versions`.
**AWS CLI**
**Untuk menghapus versi penyimpanan anotasi**
`delete-annotation-store-versions`Contoh berikut menghapus versi toko anotasi.
```
aws omics delete-annotation-store-versions \
--name my_annotation_store \
--versions my_version
```
Output:
```
{
"errors": []
}
```
Untuk informasi selengkapnya, lihat [Membuat versi baru penyimpanan anotasi](https://docs.aws.amazon.com/omics/latest/dev/annotation-store-versioning.html) di *Panduan AWS HealthOmics Pengguna*.
+ Untuk detail API, lihat [DeleteAnnotationStoreVersions](https://awscli.amazonaws.com/v2/documentation/api/latest/reference/omics/delete-annotation-store-versions.html)di *Referensi AWS CLI Perintah*.
### `delete-annotation-store`
Contoh kode berikut menunjukkan cara menggunakan`delete-annotation-store`.
**AWS CLI**
**Untuk menghapus toko anotasi**
`delete-annotation-store`Contoh berikut menghapus toko anotasi bernama. `my_vcf_store`
```
aws omics delete-annotation-store \
--name my_vcf_store
```
Output:
```
{
"status": "DELETING"
}
```
Untuk informasi selengkapnya, lihat [Omics Analytics](https://docs.aws.amazon.com/omics/latest/dev/omics-analytics.html) di Panduan *Pengembang Amazon Omics*.
+ Untuk detail API, lihat [DeleteAnnotationStore](https://awscli.amazonaws.com/v2/documentation/api/latest/reference/omics/delete-annotation-store.html)di *Referensi AWS CLI Perintah*.
### `delete-reference-store`
Contoh kode berikut menunjukkan cara menggunakan`delete-reference-store`.
**AWS CLI**
**Untuk menghapus toko referensi**
`delete-reference-store`Contoh berikut menghapus toko referensi dengan ID`1234567890`.
```
aws omics delete-reference-store \
--id 1234567890
```
Untuk informasi selengkapnya, lihat [Penyimpanan Omics](https://docs.aws.amazon.com/omics/latest/dev/sequence-stores.html) di Panduan *Pengembang Amazon Omics*.
+ Untuk detail API, lihat [DeleteReferenceStore](https://awscli.amazonaws.com/v2/documentation/api/latest/reference/omics/delete-reference-store.html)di *Referensi AWS CLI Perintah*.
### `delete-reference`
Contoh kode berikut menunjukkan cara menggunakan`delete-reference`.
**AWS CLI**
**Untuk menghapus referensi**
`delete-reference`Contoh berikut menghapus referensi.
```
aws omics delete-reference \
--reference-store-id 1234567890 \
--id 1234567890
```
Untuk informasi selengkapnya, lihat [Penyimpanan Omics](https://docs.aws.amazon.com/omics/latest/dev/sequence-stores.html) di Panduan *Pengembang Amazon Omics*.
+ Untuk detail API, lihat [DeleteReference](https://awscli.amazonaws.com/v2/documentation/api/latest/reference/omics/delete-reference.html)di *Referensi AWS CLI Perintah*.
### `delete-run-group`
Contoh kode berikut menunjukkan cara menggunakan`delete-run-group`.
**AWS CLI**
**Untuk menghapus grup run**
`delete-run-group`Contoh berikut menghapus grup run dengan ID`1234567`.
```
aws omics delete-run-group \
--id 1234567
```
Untuk informasi selengkapnya, lihat [Menghapus grup berjalan dan menjalankan](https://docs.aws.amazon.com/omics/latest/dev/deleting-workflows-and-runs.html) di *Panduan AWS HealthOmics Pengguna*.
+ Untuk detail API, lihat [DeleteRunGroup](https://awscli.amazonaws.com/v2/documentation/api/latest/reference/omics/delete-run-group.html)di *Referensi AWS CLI Perintah*.
### `delete-run`
Contoh kode berikut menunjukkan cara menggunakan`delete-run`.
**AWS CLI**
**Untuk menghapus alur kerja yang dijalankan**
`delete-run`Contoh berikut menghapus run dengan ID`1234567`.
```
aws omics delete-run \
--id 1234567
```
Untuk informasi selengkapnya, lihat [Menghapus grup berjalan dan menjalankan](https://docs.aws.amazon.com/omics/latest/dev/deleting-workflows-and-runs.html) di *Panduan AWS HealthOmics Pengguna*.
+ Untuk detail API, lihat [DeleteRun](https://awscli.amazonaws.com/v2/documentation/api/latest/reference/omics/delete-run.html)di *Referensi AWS CLI Perintah*.
### `delete-sequence-store`
Contoh kode berikut menunjukkan cara menggunakan`delete-sequence-store`.
**AWS CLI**
**Untuk menghapus toko urutan**
`delete-sequence-store`Contoh berikut menghapus toko urutan dengan ID`1234567890`.
```
aws omics delete-sequence-store \
--id 1234567890
```
Untuk informasi selengkapnya, lihat [Penyimpanan Omics](https://docs.aws.amazon.com/omics/latest/dev/sequence-stores.html) di Panduan *Pengembang Amazon Omics*.
+ Untuk detail API, lihat [DeleteSequenceStore](https://awscli.amazonaws.com/v2/documentation/api/latest/reference/omics/delete-sequence-store.html)di *Referensi AWS CLI Perintah*.
### `delete-share`
Contoh kode berikut menunjukkan cara menggunakan`delete-share`.
**AWS CLI**
**Untuk menghapus bagian data HealthOmics analitik**
`delete-share`Contoh berikut menghapus pangsa data analitik lintas akun.
```
aws omics delete-share \
--share-id "495c21bedc889d07d0ab69d710a6841e-dd75ab7a1a9c384fa848b5bd8e5a7e0a"
```
Output:
```
{
"status": "DELETING"
}
```
Untuk informasi selengkapnya, lihat [Berbagi lintas akun](https://docs.aws.amazon.com/omics/latest/dev/cross-account-sharing.html) di *Panduan AWS HealthOmics Pengguna*.
+ Untuk detail API, lihat [DeleteShare](https://awscli.amazonaws.com/v2/documentation/api/latest/reference/omics/delete-share.html)di *Referensi AWS CLI Perintah*.
### `delete-variant-store`
Contoh kode berikut menunjukkan cara menggunakan`delete-variant-store`.
**AWS CLI**
**Untuk menghapus toko varian**
`delete-variant-store`Contoh berikut menghapus toko varian bernama`my_var_store`.
```
aws omics delete-variant-store \
--name my_var_store
```
Output:
```
{
"status": "DELETING"
}
```
Untuk informasi selengkapnya, lihat [Omics Analytics](https://docs.aws.amazon.com/omics/latest/dev/omics-analytics.html) di Panduan *Pengembang Amazon Omics*.
+ Untuk detail API, lihat [DeleteVariantStore](https://awscli.amazonaws.com/v2/documentation/api/latest/reference/omics/delete-variant-store.html)di *Referensi AWS CLI Perintah*.
### `delete-workflow`
Contoh kode berikut menunjukkan cara menggunakan`delete-workflow`.
**AWS CLI**
**Untuk menghapus alur kerja**
`delete-workflow`Contoh berikut menghapus alur kerja dengan ID. `1234567`
```
aws omics delete-workflow \
--id 1234567
```
Untuk informasi selengkapnya, lihat [Menghapus alur kerja pribadi](https://docs.aws.amazon.com/omics/latest/dev/delete-private-workflow.html) di *Panduan AWS HealthOmics Pengguna*.
+ Untuk detail API, lihat [DeleteWorkflow](https://awscli.amazonaws.com/v2/documentation/api/latest/reference/omics/delete-workflow.html)di *Referensi AWS CLI Perintah*.
### `get-annotation-import-job`
Contoh kode berikut menunjukkan cara menggunakan`get-annotation-import-job`.
**AWS CLI**
**Untuk melihat pekerjaan impor anotasi**
`get-annotation-import-job`Contoh berikut mendapatkan detail tentang pekerjaan impor anotasi.
```
aws omics get-annotation-import-job \
--job-id 984162c7-xmpl-4d23-ab47-286f7950bfbf
```
Output:
```
{
"creationTime": "2022-11-30T01:40:11.017746Z",
"destinationName": "tsv_ann_store",
"id": "984162c7-xmpl-4d23-ab47-286f7950bfbf",
"items": [
{
"jobStatus": "COMPLETED",
"source": "s3://omics-artifacts-01d6xmpl4e72dd32/targetedregions.bed.gz"
}
],
"roleArn": "arn:aws:iam::123456789012:role/omics-service-role-serviceRole-W8O1XMPL7QZ",
"runLeftNormalization": false,
"status": "COMPLETED",
"updateTime": "2022-11-30T01:42:39.134009Z"
}
```
Untuk informasi selengkapnya, lihat [Omics Analytics](https://docs.aws.amazon.com/omics/latest/dev/omics-analytics.html) di Panduan *Pengembang Amazon Omics*.
+ Untuk detail API, lihat [GetAnnotationImportJob](https://awscli.amazonaws.com/v2/documentation/api/latest/reference/omics/get-annotation-import-job.html)di *Referensi AWS CLI Perintah*.
### `get-annotation-store-version`
Contoh kode berikut menunjukkan cara menggunakan`get-annotation-store-version`.
**AWS CLI**
**Untuk mengambil metadata untuk versi penyimpanan anotasi**
`get-annotation-store-version`Contoh berikut mengambil metadata untuk versi penyimpanan anotasi yang diminta.
```
aws omics get-annotation-store-version \
--name my_annotation_store \
--version-name my_version
```
Output:
```
{
"storeId": "4934045d1c6d",
"id": "2a3f4a44aa7b",
"status": "ACTIVE",
"versionArn": "arn:aws:omics:us-west-2:555555555555:annotationStore/my_annotation_store/version/my_version",
"name": "my_annotation_store",
"versionName": "my_version",
"creationTime": "2023-07-21T17:15:49.251040+00:00",
"updateTime": "2023-07-21T17:15:56.434223+00:00",
"statusMessage": "",
"versionSizeBytes": 0
}
```
Untuk informasi selengkapnya, lihat [Membuat versi baru penyimpanan anotasi](https://docs.aws.amazon.com/omics/latest/dev/annotation-store-versioning.html) di *Panduan AWS HealthOmics Pengguna*.
+ Untuk detail API, lihat [GetAnnotationStoreVersion](https://awscli.amazonaws.com/v2/documentation/api/latest/reference/omics/get-annotation-store-version.html)di *Referensi AWS CLI Perintah*.
### `get-annotation-store`
Contoh kode berikut menunjukkan cara menggunakan`get-annotation-store`.
**AWS CLI**
**Untuk melihat toko anotasi**
`get-annotation-store`Contoh berikut mendapatkan rincian tentang toko anotasi bernama`my_ann_store`.
```
aws omics get-annotation-store \
--name my_ann_store
```
Output:
```
{
"creationTime": "2022-11-23T22:48:39.226492Z",
"id": "0a91xmplc71f",
"name": "my_ann_store",
"reference": {
"referenceArn": "arn:aws:omics:us-west-2:123456789012:referenceStore/1234567890/reference/1234567890"
},
"status": "CREATING",
"storeArn": "arn:aws:omics:us-west-2:123456789012:annotationStore/my_ann_store",
"storeFormat": "VCF",
"storeSizeBytes": 0,
"tags": {}
}
```
Untuk informasi selengkapnya, lihat [Omics Analytics](https://docs.aws.amazon.com/omics/latest/dev/omics-analytics.html) di Panduan *Pengembang Amazon Omics*.
+ Untuk detail API, lihat [GetAnnotationStore](https://awscli.amazonaws.com/v2/documentation/api/latest/reference/omics/get-annotation-store.html)di *Referensi AWS CLI Perintah*.
### `get-read-set-activation-job`
Contoh kode berikut menunjukkan cara menggunakan`get-read-set-activation-job`.
**AWS CLI**
**Untuk melihat pekerjaan aktivasi set baca**
`get-read-set-activation-job`Contoh berikut mendapatkan detail tentang pekerjaan aktivasi set baca.
```
aws omics get-read-set-activation-job \
--sequence-store-id 1234567890 \
--id 1234567890
```
Output:
```
{
"completionTime": "2022-12-06T22:33:42.828Z",
"creationTime": "2022-12-06T22:32:45.213Z",
"id": "1234567890",
"sequenceStoreId": "1234567890",
"sources": [
{
"readSetId": "1234567890",
"status": "FINISHED",
"statusMessage": "No activation needed as read set is already in ACTIVATING or ACTIVE state."
}
],
"status": "COMPLETED",
"statusMessage": "The job completed successfully."
}
```
Untuk informasi selengkapnya, lihat [Penyimpanan Omics](https://docs.aws.amazon.com/omics/latest/dev/sequence-stores.html) di Panduan *Pengembang Amazon Omics*.
+ Untuk detail API, lihat [GetReadSetActivationJob](https://awscli.amazonaws.com/v2/documentation/api/latest/reference/omics/get-read-set-activation-job.html)di *Referensi AWS CLI Perintah*.
### `get-read-set-export-job`
Contoh kode berikut menunjukkan cara menggunakan`get-read-set-export-job`.
**AWS CLI**
**Untuk melihat pekerjaan ekspor set baca**
`get-read-set-export-job`Contoh berikut mendapatkan detail tentang pekerjaan ekspor set baca.
```
aws omics get-read-set-export-job \
--sequence-store-id 1234567890 \
--id 1234567890
```
Output:
```
{
"completionTime": "2022-12-06T22:39:14.491Z",
"creationTime": "2022-12-06T22:37:18.612Z",
"destination": "s3://omics-artifacts-01d6xmpl4e72dd32/read-set-export/",
"id": "1234567890",
"sequenceStoreId": "1234567890",
"status": "COMPLETED",
"statusMessage": "The job is submitted and will start soon."
}
```
Untuk informasi selengkapnya, lihat [Penyimpanan Omics](https://docs.aws.amazon.com/omics/latest/dev/sequence-stores.html) di Panduan *Pengembang Amazon Omics*.
+ Untuk detail API, lihat [GetReadSetExportJob](https://awscli.amazonaws.com/v2/documentation/api/latest/reference/omics/get-read-set-export-job.html)di *Referensi AWS CLI Perintah*.
### `get-read-set-import-job`
Contoh kode berikut menunjukkan cara menggunakan`get-read-set-import-job`.
**AWS CLI**
**Untuk melihat pekerjaan impor set baca**
`get-read-set-import-job`Contoh berikut mendapatkan rincian tentang pekerjaan impor set baca.
```
aws omics get-read-set-import-job \
--sequence-store-id 1234567890 \
--id 1234567890
```
Output:
```
{
"creationTime": "2022-11-23T01:36:38.158Z",
"id": "1234567890",
"roleArn": "arn:aws:iam::123456789012:role/omics-service-role-serviceRole-W8O1XMPL7QZ",
"sequenceStoreId": "1234567890",
"sources": [
{
"name": "HG00100",
"referenceArn": "arn:aws:omics:us-west-2:123456789012:referenceStore/1234567890/reference/1234567890",
"sampleId": "bam-sample",
"sourceFileType": "BAM",
"sourceFiles": {
"source1": "s3://omics-artifacts-01d6xmpl4e72dd32/HG00100.chrom20.ILLUMINA.bwa.GBR.low_coverage.20101123.bam",
"source2": ""
},
"status": "IN_PROGRESS",
"statusMessage": "The source job is currently in progress.",
"subjectId": "bam-subject",
"tags": {
"aws:omics:sampleId": "bam-sample",
"aws:omics:subjectId": "bam-subject"
}
},
{
"name": "HG00146",
"referenceArn": "arn:aws:omics:us-west-2:123456789012:referenceStore/1234567890/reference/1234567890",
"sampleId": "fastq-sample",
"sourceFileType": "FASTQ",
"sourceFiles": {
"source1": "s3://omics-artifacts-01d6xmpl4e72dd32/SRR233106_1.filt.fastq.gz",
"source2": "s3://omics-artifacts-01d6xmpl4e72dd32/SRR233106_2.filt.fastq.gz"
},
"status": "IN_PROGRESS",
"statusMessage": "The source job is currently in progress.",
"subjectId": "fastq-subject",
"tags": {
"aws:omics:sampleId": "fastq-sample",
"aws:omics:subjectId": "fastq-subject"
}
},
{
"name": "HG00096",
"referenceArn": "arn:aws:omics:us-west-2:123456789012:referenceStore/1234567890/reference/1234567890",
"sampleId": "cram-sample",
"sourceFileType": "CRAM",
"sourceFiles": {
"source1": "s3://omics-artifacts-01d6xmpl4e72dd32/HG00096.alt_bwamem_GRCh38DH.20150718.GBR.low_coverage.cram",
"source2": ""
},
"status": "IN_PROGRESS",
"statusMessage": "The source job is currently in progress.",
"subjectId": "cram-subject",
"tags": {
"aws:omics:sampleId": "cram-sample",
"aws:omics:subjectId": "cram-subject"
}
}
],
"status": "IN_PROGRESS",
"statusMessage": "The job is currently in progress."
}
```
Untuk informasi selengkapnya, lihat [Penyimpanan Omics](https://docs.aws.amazon.com/omics/latest/dev/sequence-stores.html) di Panduan *Pengembang Amazon Omics*.
+ Untuk detail API, lihat [GetReadSetImportJob](https://awscli.amazonaws.com/v2/documentation/api/latest/reference/omics/get-read-set-import-job.html)di *Referensi AWS CLI Perintah*.
### `get-read-set-metadata`
Contoh kode berikut menunjukkan cara menggunakan`get-read-set-metadata`.
**AWS CLI**
**Untuk melihat set baca**
`get-read-set-metadata`Contoh berikut mendapatkan rincian tentang file set baca.
```
aws omics get-read-set-metadata \
--sequence-store-id 1234567890 \
--id 1234567890
```
Output:
```
{
"arn": "arn:aws:omics:us-west-2:123456789012:sequenceStore/1234567890/readSet/1234567890",
"creationTime": "2022-11-23T21:55:00.515Z",
"fileType": "FASTQ",
"files": {
"source1": {
"contentLength": 310054739,
"partSize": 104857600,
"totalParts": 3
},
"source2": {
"contentLength": 307846621,
"partSize": 104857600,
"totalParts": 3
}
},
"id": "1234567890",
"name": "HG00146",
"referenceArn": "arn:aws:omics:us-west-2:123456789012:referenceStore/1234567890/reference/1234567890",
"sampleId": "fastq-sample",
"sequenceInformation": {
"alignment": "UNALIGNED",
"totalBaseCount": 677717384,
"totalReadCount": 8917334
},
"sequenceStoreId": "1234567890",
"status": "ACTIVE",
"subjectId": "fastq-subject"
}
```
Untuk informasi selengkapnya, lihat [Penyimpanan Omics](https://docs.aws.amazon.com/omics/latest/dev/sequence-stores.html) di Panduan *Pengembang Amazon Omics*.
+ Untuk detail API, lihat [GetReadSetMetadata](https://awscli.amazonaws.com/v2/documentation/api/latest/reference/omics/get-read-set-metadata.html)di *Referensi AWS CLI Perintah*.
### `get-read-set`
Contoh kode berikut menunjukkan cara menggunakan`get-read-set`.
**AWS CLI**
**Untuk mengunduh set baca**
`get-read-set`Contoh berikut mengunduh bagian 3 dari set baca sebagai`1234567890.3.bam`.
```
aws omics get-read-set \
--sequence-store-id 1234567890 \
--id 1234567890 \
--part-number 3 1234567890.3.bam
```
Untuk informasi selengkapnya, lihat [Penyimpanan Omics](https://docs.aws.amazon.com/omics/latest/dev/sequence-stores.html) di Panduan *Pengembang Amazon Omics*.
+ Untuk detail API, lihat [GetReadSet](https://awscli.amazonaws.com/v2/documentation/api/latest/reference/omics/get-read-set.html)di *Referensi AWS CLI Perintah*.
### `get-reference-import-job`
Contoh kode berikut menunjukkan cara menggunakan`get-reference-import-job`.
**AWS CLI**
**Untuk melihat pekerjaan impor referensi**
`get-reference-import-job`Contoh contoh berikut mendapatkan rincian tentang pekerjaan impor referensi.
```
aws omics get-reference-import-job \
--reference-store-id 1234567890 \
--id 1234567890
```
Output:
```
{
"creationTime": "2022-11-22T22:25:41.124Z",
"id": "1234567890",
"referenceStoreId": "1234567890",
"roleArn": "arn:aws:iam::123456789012:role/omics-service-role-serviceRole-W8O1XMPL7QZ",
"sources": [
{
"name": "assembly-38",
"sourceFile": "s3://omics-artifacts-01d6xmpl4e72dd32/Homo_sapiens_assembly38.fasta",
"status": "IN_PROGRESS",
"statusMessage": "The source job is currently in progress."
}
],
"status": "IN_PROGRESS",
"statusMessage": "The job is currently in progress."
}
```
Untuk informasi selengkapnya, lihat [Penyimpanan Omics](https://docs.aws.amazon.com/omics/latest/dev/sequence-stores.html) di Panduan *Pengembang Amazon Omics*.
+ Untuk detail API, lihat [GetReferenceImportJob](https://awscli.amazonaws.com/v2/documentation/api/latest/reference/omics/get-reference-import-job.html)di *Referensi AWS CLI Perintah*.
### `get-reference-metadata`
Contoh kode berikut menunjukkan cara menggunakan`get-reference-metadata`.
**AWS CLI**
**Untuk melihat referensi**
`get-reference-metadata`Contoh berikut mendapatkan rincian tentang referensi.
```
aws omics get-reference-metadata \
--reference-store-id 1234567890 \
--id 1234567890
```
Output:
```
{
"arn": "arn:aws:omics:us-west-2:123456789012:referenceStore/1234567890/reference/1234567890",
"creationTime": "2022-11-22T22:27:09.033Z",
"files": {
"index": {
"contentLength": 160928,
"partSize": 104857600,
"totalParts": 1
},
"source": {
"contentLength": 3249912778,
"partSize": 104857600,
"totalParts": 31
}
},
"id": "1234567890",
"md5": "7ff134953dcca8c8997453bbb80b6b5e",
"name": "assembly-38",
"referenceStoreId": "1234567890",
"status": "ACTIVE",
"updateTime": "2022-11-22T22:27:09.033Z"
}
```
Untuk informasi selengkapnya, lihat [Penyimpanan Omics](https://docs.aws.amazon.com/omics/latest/dev/sequence-stores.html) di Panduan *Pengembang Amazon Omics*.
+ Untuk detail API, lihat [GetReferenceMetadata](https://awscli.amazonaws.com/v2/documentation/api/latest/reference/omics/get-reference-metadata.html)di *Referensi AWS CLI Perintah*.
### `get-reference-store`
Contoh kode berikut menunjukkan cara menggunakan`get-reference-store`.
**AWS CLI**
**Untuk melihat toko referensi**
`get-reference-store`Contoh berikut mendapatkan rincian tentang toko referensi.
```
aws omics get-reference-store \
--id 1234567890
```
Output:
```
{
"arn": "arn:aws:omics:us-west-2:123456789012:referenceStore/1234567890",
"creationTime": "2022-09-23T23:27:20.364Z",
"id": "1234567890",
"name": "my-rstore-0"
}
```
Untuk informasi selengkapnya, lihat [Penyimpanan Omics](https://docs.aws.amazon.com/omics/latest/dev/sequence-stores.html) di Panduan *Pengembang Amazon Omics*.
+ Untuk detail API, lihat [GetReferenceStore](https://awscli.amazonaws.com/v2/documentation/api/latest/reference/omics/get-reference-store.html)di *Referensi AWS CLI Perintah*.
### `get-reference`
Contoh kode berikut menunjukkan cara menggunakan`get-reference`.
**AWS CLI**
**Untuk mengunduh referensi genom**
`get-reference`Contoh berikut mengunduh bagian 1 dari genom sebagai`hg38.1.fa`.
```
aws omics get-reference \
--reference-store-id 1234567890 \
--id 1234567890 \
--part-number 1 hg38.1.fa
```
Untuk informasi selengkapnya, lihat [Penyimpanan Omics](https://docs.aws.amazon.com/omics/latest/dev/sequence-stores.html) di Panduan *Pengembang Amazon Omics*.
+ Untuk detail API, lihat [GetReference](https://awscli.amazonaws.com/v2/documentation/api/latest/reference/omics/get-reference.html)di *Referensi AWS CLI Perintah*.
### `get-run-group`
Contoh kode berikut menunjukkan cara menggunakan`get-run-group`.
**AWS CLI**
**Untuk melihat grup run**
`get-run-group`Contoh berikut mendapatkan rincian tentang grup run.
```
aws omics get-run-group \
--id 1234567
```
Output:
```
{
"arn": "arn:aws:omics:us-west-2:123456789012:runGroup/1234567",
"creationTime": "2022-12-01T00:58:42.915219Z",
"id": "1234567",
"maxCpus": 20,
"maxDuration": 600,
"name": "cram-convert",
"tags": {}
}
```
Untuk informasi selengkapnya, lihat [Membuat grup yang dijalankan](https://docs.aws.amazon.com/omics/latest/dev/creating-run-groups.html) di *Panduan AWS HealthOmics Pengguna*.
+ Untuk detail API, lihat [GetRunGroup](https://awscli.amazonaws.com/v2/documentation/api/latest/reference/omics/get-run-group.html)di *Referensi AWS CLI Perintah*.
### `get-run-task`
Contoh kode berikut menunjukkan cara menggunakan`get-run-task`.
**AWS CLI**
**Untuk melihat tugas**
`get-run-task`Contoh berikut mendapatkan rincian tentang tugas alur kerja.
```
aws omics get-run-task \
--id 1234567 \
--task-id 1234567
```
Output:
```
{
"cpus": 1,
"creationTime": "2022-11-30T23:13:00.718651Z",
"logStream": "arn:aws:logs:us-west-2:123456789012:log-group:/aws/omics/WorkflowLog:log-stream:run/1234567/task/1234567",
"memory": 15,
"name": "CramToBamTask",
"startTime": "2022-11-30T23:17:47.016Z",
"status": "COMPLETED",
"stopTime": "2022-11-30T23:18:21.503Z",
"taskId": "1234567"
}
```
Untuk informasi selengkapnya, lihat [Siklus hidup tugas yang HealthOmics dijalankan](https://docs.aws.amazon.com/omics/latest/dev/workflow-run-tasks.html) di *AWS HealthOmics Panduan Pengguna*.
+ Untuk detail API, lihat [GetRunTask](https://awscli.amazonaws.com/v2/documentation/api/latest/reference/omics/get-run-task.html)di *Referensi AWS CLI Perintah*.
### `get-run`
Contoh kode berikut menunjukkan cara menggunakan`get-run`.
**AWS CLI**
**Untuk melihat alur kerja yang dijalankan**
`get-run`Contoh berikut mendapatkan rincian tentang alur kerja yang dijalankan.
```
aws omics get-run \
--id 1234567
```
Output:
```
{
"arn": "arn:aws:omics:us-west-2:123456789012:run/1234567",
"creationTime": "2022-11-30T22:58:22.615865Z",
"digest": "sha256:c54bxmpl742dcc26f7fa1f10e37550ddd8f251f418277c0a58e895b801ed28cf",
"id": "1234567",
"name": "cram-to-bam",
"outputUri": "s3://omics-artifacts-01d6xmpl4e72dd32/workflow-output/",
"parameters": {
"ref_dict": "s3://omics-artifacts-01d6xmpl4e72dd32/Homo_sapiens_assembly38.dict",
"ref_fasta_index": "s3://omics-artifacts-01d6xmpl4e72dd32/Homo_sapiens_assembly38.fasta.fai",
"ref_fasta": "s3://omics-artifacts-01d6xmpl4e72dd32/Homo_sapiens_assembly38.fasta",
"sample_name": "NA12878",
"input_cram": "s3://omics-artifacts-01d6xmpl4e72dd32/NA12878.cram"
},
"resourceDigests": {
"s3://omics-artifacts-01d6xmpl4e72dd32/Homo_sapiens_assembly38.fasta.fai": "etag:f76371b113734a56cde236bc0372de0a",
"s3://omics-artifacts-01d6xmpl4e72dd32/Homo_sapiens_assembly38.dict": "etag:3884c62eb0e53fa92459ed9bff133ae6",
"s3://omics-artifacts-01d6xmpl4e72dd32/Homo_sapiens_assembly38.fasta": "etag:e307d81c605fb91b7720a08f00276842-388",
"s3://omics-artifacts-01d6xmpl4e72dd32/NA12878.cram": "etag:a9f52976381286c6143b5cc681671ec6"
},
"roleArn": "arn:aws:iam::123456789012:role/omics-service-role-serviceRole-W8O1XMPL7QZ",
"startedBy": "arn:aws:iam::123456789012:user/laptop-2020",
"status": "STARTING",
"tags": {},
"workflowId": "1234567",
"workflowType": "PRIVATE"
}
```
*Untuk informasi selengkapnya, lihat [Menjalankan siklus hidup dalam alur kerja di Panduan](https://docs.aws.amazon.com/omics/latest/dev/monitoring-runs.html) Pengguna.AWS HealthOmics *
+ Untuk detail API, lihat [GetRun](https://awscli.amazonaws.com/v2/documentation/api/latest/reference/omics/get-run.html)di *Referensi AWS CLI Perintah*.
### `get-sequence-store`
Contoh kode berikut menunjukkan cara menggunakan`get-sequence-store`.
**AWS CLI**
**Untuk melihat toko urutan**
`get-sequence-store`Contoh berikut mendapatkan rincian tentang toko urutan dengan ID`1234567890`.
```
aws omics get-sequence-store \
--id 1234567890
```
Output:
```
{
"arn": "arn:aws:omics:us-east-1:123456789012:sequenceStore/1234567890",
"creationTime": "2022-11-23T19:55:48.376Z",
"id": "1234567890",
"name": "my-seq-store"
}
```
Untuk informasi selengkapnya, lihat [Penyimpanan Omics](https://docs.aws.amazon.com/omics/latest/dev/sequence-stores.html) di Panduan *Pengembang Amazon Omics*.
+ Untuk detail API, lihat [GetSequenceStore](https://awscli.amazonaws.com/v2/documentation/api/latest/reference/omics/get-sequence-store.html)di *Referensi AWS CLI Perintah*.
### `get-share`
Contoh kode berikut menunjukkan cara menggunakan`get-share`.
**AWS CLI**
**Untuk mengambil metadata tentang bagian data analitik HealthOmics **
`get-share`Contoh berikut mengambil metadata untuk berbagi data analitik lintas akun.
```
aws omics get-share \
--share-id "495c21bedc889d07d0ab69d710a6841e-dd75ab7a1a9c384fa848b5bd8e5a7e0a"
```
Output:
```
{
"share": {
"shareId": "495c21bedc889d07d0ab69d710a6841e-dd75ab7a1a9c384fa848b5bd8e5a7e0a",
"name": "my_Share-123",
"resourceArn": "arn:aws:omics:us-west-2:555555555555:variantStore/omics_dev_var_store",
"principalSubscriber": "123456789012",
"ownerId": "555555555555",
"status": "PENDING"
}
}
```
Untuk informasi selengkapnya, lihat [Berbagi lintas akun](https://docs.aws.amazon.com/omics/latest/dev/cross-account-sharing.html) di *Panduan AWS HealthOmics Pengguna*.
+ Untuk detail API, lihat [GetShare](https://awscli.amazonaws.com/v2/documentation/api/latest/reference/omics/get-share.html)di *Referensi AWS CLI Perintah*.
### `get-variant-import-job`
Contoh kode berikut menunjukkan cara menggunakan`get-variant-import-job`.
**AWS CLI**
**Untuk melihat pekerjaan impor varian**
`get-variant-import-job`Contoh berikut mendapatkan detail tentang pekerjaan impor varian.
```
aws omics get-variant-import-job \
--job-id edd7b8ce-xmpl-47e2-bc99-258cac95a508
```
Output:
```
{
"creationTime": "2022-11-23T22:42:50.037812Z",
"destinationName": "my_var_store",
"id": "edd7b8ce-xmpl-47e2-bc99-258cac95a508",
"items": [
{
"jobStatus": "IN_PROGRESS",
"source": "s3://omics-artifacts-01d6xmpl4e72dd32/Homo_sapiens_assembly38.known_indels.vcf.gz"
}
],
"roleArn": "arn:aws:iam::123456789012:role/omics-service-role-serviceRole-W8O1XMPL7QZ",
"runLeftNormalization": false,
"status": "IN_PROGRESS",
"updateTime": "2022-11-23T22:43:05.898309Z"
}
```
Untuk informasi selengkapnya, lihat [Omics Analytics](https://docs.aws.amazon.com/omics/latest/dev/omics-analytics.html) di Panduan *Pengembang Amazon Omics*.
+ Untuk detail API, lihat [GetVariantImportJob](https://awscli.amazonaws.com/v2/documentation/api/latest/reference/omics/get-variant-import-job.html)di *Referensi AWS CLI Perintah*.
### `get-variant-store`
Contoh kode berikut menunjukkan cara menggunakan`get-variant-store`.
**AWS CLI**
**Untuk melihat toko varian**
`get-variant-store`Contoh berikut mendapatkan detail tentang toko varian.
```
aws omics get-variant-store \
--name my_var_store
```
Output:
```
{
"creationTime": "2022-11-23T22:09:07.534499Z",
"id": "02dexmplcfdd",
"name": "my_var_store",
"reference": {
"referenceArn": "arn:aws:omics:us-west-2:123456789012:referenceStore/1234567890/reference/1234567890"
},
"status": "CREATING",
"storeArn": "arn:aws:omics:us-west-2:123456789012:variantStore/my_var_store",
"storeSizeBytes": 0,
"tags": {},
"updateTime": "2022-11-23T22:09:24.931711Z"
}
```
Untuk informasi selengkapnya, lihat [Omics Analytics](https://docs.aws.amazon.com/omics/latest/dev/omics-analytics.html) di Panduan *Pengembang Amazon Omics*.
+ Untuk detail API, lihat [GetVariantStore](https://awscli.amazonaws.com/v2/documentation/api/latest/reference/omics/get-variant-store.html)di *Referensi AWS CLI Perintah*.
### `get-workflow`
Contoh kode berikut menunjukkan cara menggunakan`get-workflow`.
**AWS CLI**
**Untuk melihat alur kerja**
`get-workflow`Contoh berikut mendapatkan rincian tentang alur kerja dengan ID`1234567`.
```
aws omics get-workflow \
--id 1234567
```
Output:
```
{
"arn": "arn:aws:omics:us-west-2:123456789012:workflow/1234567",
"creationTime": "2022-11-30T22:33:16.225368Z",
"digest": "sha256:c54bxmpl742dcc26f7fa1f10e37550ddd8f251f418277c0a58e895b801ed28cf",
"engine": "WDL",
"id": "1234567",
"main": "workflow-crambam.wdl",
"name": "cram-converter",
"parameterTemplate": {
"ref_dict": {
"description": "dictionary file for 'ref_fasta'"
},
"ref_fasta_index": {
"description": "Index of the reference genome fasta file"
},
"ref_fasta": {
"description": "Reference genome fasta file"
},
"input_cram": {
"description": "The Cram file to convert to BAM"
},
"sample_name": {
"description": "The name of the input sample, used to name the output BAM"
}
},
"status": "ACTIVE",
"statusMessage": "workflow-crambam.wdl\n workflow CramToBamFlow\n call CramToBamTask\n call ValidateSamFile\n task CramToBamTask\n task ValidateSamFile\n",
"tags": {},
"type": "PRIVATE"
}
```
Untuk informasi selengkapnya, lihat [Membuat alur kerja pribadi](https://docs.aws.amazon.com/omics/latest/dev/workflows-setup.html) di *Panduan AWS HealthOmics Pengguna*.
+ Untuk detail API, lihat [GetWorkflow](https://awscli.amazonaws.com/v2/documentation/api/latest/reference/omics/get-workflow.html)di *Referensi AWS CLI Perintah*.
### `list-annotation-import-jobs`
Contoh kode berikut menunjukkan cara menggunakan`list-annotation-import-jobs`.
**AWS CLI**
**Untuk mendapatkan daftar pekerjaan impor anotasi**
Berikut ini `list-annotation-import-jobs` mendapatkan daftar pekerjaan impor anotasi.
```
aws omics list-annotation-import-jobs
```
Output:
```
{
"annotationImportJobs": [
{
"creationTime": "2022-11-30T01:39:41.478294Z",
"destinationName": "gff_ann_store",
"id": "18a9e792-xmpl-4869-a105-e5b602900444",
"roleArn": "arn:aws:iam::123456789012:role/omics-service-role-serviceRole-W8O1XMPL7QZ",
"runLeftNormalization": false,
"status": "COMPLETED",
"updateTime": "2022-11-30T01:47:09.145178Z"
},
{
"creationTime": "2022-11-30T00:45:58.007838Z",
"destinationName": "my_ann_store",
"id": "4e9eafc8-xmpl-431e-a0b2-3bda27cb600a",
"roleArn": "arn:aws:iam::123456789012:role/omics-service-role-serviceRole-W8O1XMPL7QZ",
"runLeftNormalization": false,
"status": "FAILED",
"updateTime": "2022-11-30T00:47:01.706325Z"
}
]
}
```
Untuk informasi selengkapnya, lihat [Omics Analytics](https://docs.aws.amazon.com/omics/latest/dev/omics-analytics.html) di Panduan *Pengembang Amazon Omics*.
+ Untuk detail API, lihat [ListAnnotationImportJobs](https://awscli.amazonaws.com/v2/documentation/api/latest/reference/omics/list-annotation-import-jobs.html)di *Referensi AWS CLI Perintah*.
### `list-annotation-store-versions`
Contoh kode berikut menunjukkan cara menggunakan`list-annotation-store-versions`.
**AWS CLI**
**Untuk membuat daftar semua versi toko anotasi.**
`list-annotation-store-versions`Contoh berikut mencantumkan semua versi yang ada dari toko anotasi.
```
aws omics list-annotation-store-versions \
--name my_annotation_store
```
Output:
```
{
"annotationStoreVersions": [
{
"storeId": "4934045d1c6d",
"id": "2a3f4a44aa7b",
"status": "CREATING",
"versionArn": "arn:aws:omics:us-west-2:555555555555:annotationStore/my_annotation_store/version/my_version_2",
"name": "my_annotation_store",
"versionName": "my_version_2",
"creation Time": "2023-07-21T17:20:59.380043+00:00",
"versionSizeBytes": 0
},
{
"storeId": "4934045d1c6d",
"id": "4934045d1c6d",
"status": "ACTIVE",
"versionArn": "arn:aws:omics:us-west-2:555555555555:annotationStore/my_annotation_store/version/my_version_1",
"name": "my_annotation_store",
"versionName": "my_version_1",
"creationTime": "2023-07-21T17:15:49.251040+00:00",
"updateTime": "2023-07-21T17:15:56.434223+00:00",
"statusMessage": "",
"versionSizeBytes": 0
}
}
```
Untuk informasi selengkapnya, lihat [Membuat versi baru penyimpanan anotasi](https://docs.aws.amazon.com/omics/latest/dev/annotation-store-versioning.html) di *Panduan AWS HealthOmics Pengguna*.
+ Untuk detail API, lihat [ListAnnotationStoreVersions](https://awscli.amazonaws.com/v2/documentation/api/latest/reference/omics/list-annotation-store-versions.html)di *Referensi AWS CLI Perintah*.
### `list-annotation-stores`
Contoh kode berikut menunjukkan cara menggunakan`list-annotation-stores`.
**AWS CLI**
**Untuk mendapatkan daftar toko anotasi**
`list-annotation-stores`Contoh berikut mendapat daftar toko anotasi.
```
aws omics list-annotation-stores
```
Output:
```
{
"annotationStores": [
{
"creationTime": "2022-11-23T22:48:39.226492Z",
"id": "0a91xmplc71f",
"name": "my_ann_store",
"reference": {
"referenceArn": "arn:aws:omics:us-west-2:123456789012:referenceStore/1234567890/reference/1234567890"
},
"status": "ACTIVE",
"statusMessage": "",
"storeArn": "arn:aws:omics:us-west-2:123456789012:annotationStore/my_ann_store",
"storeFormat": "VCF",
"storeSizeBytes": 0,
"updateTime": "2022-11-23T22:53:27.372840Z"
}
]
}
```
Untuk informasi selengkapnya, lihat [Omics Analytics](https://docs.aws.amazon.com/omics/latest/dev/omics-analytics.html) di Panduan *Pengembang Amazon Omics*.
+ Untuk detail API, lihat [ListAnnotationStores](https://awscli.amazonaws.com/v2/documentation/api/latest/reference/omics/list-annotation-stores.html)di *Referensi AWS CLI Perintah*.
### `list-multipart-read-set-uploads`
Contoh kode berikut menunjukkan cara menggunakan`list-multipart-read-set-uploads`.
**AWS CLI**
**Untuk mencantumkan semua unggahan set baca multibagian dan statusnya.**
`list-multipart-read-set-uploads`Contoh berikut mencantumkan semua unggahan set baca multibagian dan statusnya.
```
aws omics list-multipart-read-set-uploads \
--sequence-store-id 0123456789
```
Output:
```
{
"uploads":
[
{
"sequenceStoreId": "0123456789",
"uploadId": "8749584421",
"sourceFileType": "FASTQ",
"subjectId": "mySubject",
"sampleId": "mySample",
"generatedFrom": "1000 Genomes",
"name": "HG00146",
"description": "FASTQ for HG00146",
"creationTime": "2023-11-29T19:22:51.349298+00:00"
},
{
"sequenceStoreId": "0123456789",
"uploadId": "5290538638",
"sourceFileType": "BAM",
"subjectId": "mySubject",
"sampleId": "mySample",
"generatedFrom": "1000 Genomes",
"referenceArn": "arn:aws:omics:us-west-2:845448930428:referenceStore/8168613728/reference/2190697383",
"name": "HG00146",
"description": "BAM for HG00146",
"creationTime": "2023-11-29T19:23:33.116516+00:00"
},
{
"sequenceStoreId": "0123456789",
"uploadId": "4174220862",
"sourceFileType": "BAM",
"subjectId": "mySubject",
"sampleId": "mySample",
"generatedFrom": "1000 Genomes",
"referenceArn": "arn:aws:omics:us-west-2:845448930428:referenceStore/8168613728/reference/2190697383",
"name": "HG00147",
"description": "BAM for HG00147",
"creationTime": "2023-11-29T19:23:47.007866+00:00"
}
]
}
```
Untuk informasi selengkapnya, lihat [Unggahan langsung ke penyimpanan urutan](https://docs.aws.amazon.com/omics/latest/dev/synchronous-uploads.html) di *Panduan AWS HealthOmics Pengguna*.
+ Untuk detail API, lihat [ListMultipartReadSetUploads](https://awscli.amazonaws.com/v2/documentation/api/latest/reference/omics/list-multipart-read-set-uploads.html)di *Referensi AWS CLI Perintah*.
### `list-read-set-activation-jobs`
Contoh kode berikut menunjukkan cara menggunakan`list-read-set-activation-jobs`.
**AWS CLI**
**Untuk mendapatkan daftar pekerjaan aktivasi set baca**
`list-read-set-activation-jobs`Contoh berikut mendapatkan daftar pekerjaan aktivasi untuk toko urutan dengan id`1234567890`.
```
aws omics list-read-set-activation-jobs \
--sequence-store-id 1234567890
```
Output:
```
{
"activationJobs": [
{
"completionTime": "2022-12-06T22:33:42.828Z",
"creationTime": "2022-12-06T22:32:45.213Z",
"id": "1234567890",
"sequenceStoreId": "1234567890",
"status": "COMPLETED"
},
{
"creationTime": "2022-12-06T22:35:10.100Z",
"id": "1234567890",
"sequenceStoreId": "1234567890",
"status": "IN_PROGRESS"
}
]
}
```
Untuk informasi selengkapnya, lihat [Penyimpanan Omics](https://docs.aws.amazon.com/omics/latest/dev/sequence-stores.html) di Panduan *Pengembang Amazon Omics*.
+ Untuk detail API, lihat [ListReadSetActivationJobs](https://awscli.amazonaws.com/v2/documentation/api/latest/reference/omics/list-read-set-activation-jobs.html)di *Referensi AWS CLI Perintah*.
### `list-read-set-export-jobs`
Contoh kode berikut menunjukkan cara menggunakan`list-read-set-export-jobs`.
**AWS CLI**
**Untuk mendapatkan daftar pekerjaan ekspor set baca**
`list-read-set-export-jobs`Contoh berikut mendapatkan daftar pekerjaan ekspor untuk toko urutan dengan id`1234567890`.
```
aws omics list-read-set-export-jobs \
--sequence-store-id 1234567890
```
Output:
```
{
"exportJobs": [
{
"completionTime": "2022-12-06T22:39:14.491Z",
"creationTime": "2022-12-06T22:37:18.612Z",
"destination": "s3://omics-artifacts-01d6xmpl4e72dd32/read-set-export/",
"id": "1234567890",
"sequenceStoreId": "1234567890",
"status": "COMPLETED"
},
{
"creationTime": "2022-12-06T22:38:04.871Z",
"destination": "s3://omics-artifacts-01d6xmpl4e72dd32/read-set-export/",
"id": "1234567890",
"sequenceStoreId": "1234567890",
"status": "IN_PROGRESS"
}
]
}
```
Untuk informasi selengkapnya, lihat [Penyimpanan Omics](https://docs.aws.amazon.com/omics/latest/dev/sequence-stores.html) di Panduan *Pengembang Amazon Omics*.
+ Untuk detail API, lihat [ListReadSetExportJobs](https://awscli.amazonaws.com/v2/documentation/api/latest/reference/omics/list-read-set-export-jobs.html)di *Referensi AWS CLI Perintah*.
### `list-read-set-import-jobs`
Contoh kode berikut menunjukkan cara menggunakan`list-read-set-import-jobs`.
**AWS CLI**
**Untuk mendapatkan daftar pekerjaan impor set baca**
`list-read-set-import-jobs`Contoh berikut mendapatkan daftar pekerjaan impor untuk toko urutan dengan id`1234567890`.
```
aws omics list-read-set-import-jobs \
--sequence-store-id 1234567890
```
Output:
```
{
"importJobs": [
{
"completionTime": "2022-11-29T18:17:49.244Z",
"creationTime": "2022-11-29T17:32:47.700Z",
"id": "1234567890",
"roleArn": "arn:aws:iam::123456789012:role/omics-service-role-serviceRole-W8O1XMPL7QZ",
"sequenceStoreId": "1234567890",
"status": "COMPLETED"
},
{
"completionTime": "2022-11-23T22:01:34.090Z",
"creationTime": "2022-11-23T21:52:43.289Z",
"id": "1234567890",
"roleArn": "arn:aws:iam::123456789012:role/omics-service-role-serviceRole-W8O1XMPL7QZ",
"sequenceStoreId": "1234567890",
"status": "COMPLETED_WITH_FAILURES"
}
]
}
```
Untuk informasi selengkapnya, lihat [Penyimpanan Omics](https://docs.aws.amazon.com/omics/latest/dev/sequence-stores.html) di Panduan *Pengembang Amazon Omics*.
+ Untuk detail API, lihat [ListReadSetImportJobs](https://awscli.amazonaws.com/v2/documentation/api/latest/reference/omics/list-read-set-import-jobs.html)di *Referensi AWS CLI Perintah*.
### `list-read-set-upload-parts`
Contoh kode berikut menunjukkan cara menggunakan`list-read-set-upload-parts`.
**AWS CLI**
**Untuk mencantumkan semua bagian dalam unggahan multibagian yang diminta untuk penyimpanan urutan.**
`list-read-set-upload-parts`Contoh berikut mencantumkan semua bagian dalam unggahan multipart yang diminta untuk toko urutan.
```
aws omics list-read-set-upload-parts \
--sequence-store-id 0123456789 \
--upload-id 1122334455 \
--part-source SOURCE1
```
Output:
```
{
"parts": [
{
"partNumber": 1,
"partSize": 94371840,
"file": "SOURCE1",
"checksum": "984979b9928ae8d8622286c4a9cd8e99d964a22d59ed0f5722e1733eb280e635",
"lastUpdatedTime": "2023-02-02T20:14:47.533000+00:00"
}
{
"partNumber": 2,
"partSize": 10471840,
"file": "SOURCE1",
"checksum": "984979b9928ae8d8622286c4a9cd8e99d964a22d59ed0f5722e1733eb280e635",
"lastUpdatedTime": "2023-02-02T20:14:47.533000+00:00"
}
]
}
```
Untuk informasi selengkapnya, lihat [Unggahan langsung ke penyimpanan urutan](https://docs.aws.amazon.com/omics/latest/dev/synchronous-uploads.html) di *Panduan AWS HealthOmics Pengguna*.
+ Untuk detail API, lihat [ListReadSetUploadParts](https://awscli.amazonaws.com/v2/documentation/api/latest/reference/omics/list-read-set-upload-parts.html)di *Referensi AWS CLI Perintah*.
### `list-read-sets`
Contoh kode berikut menunjukkan cara menggunakan`list-read-sets`.
**AWS CLI**
**Untuk mendapatkan daftar set baca**
`list-read-sets`Contoh berikut mendapatkan daftar set baca untuk toko urutan dengan id`1234567890`.
```
aws omics list-read-sets \
--sequence-store-id 1234567890
```
Output:
```
{
"readSets": [
{
"arn": "arn:aws:omics:us-west-2:123456789012:sequenceStore/1234567890/readSet/1234567890",
"creationTime": "2022-11-23T21:55:00.515Z",
"fileType": "FASTQ",
"id": "1234567890",
"name": "HG00146",
"referenceArn": "arn:aws:omics:us-west-2:123456789012:referenceStore/1234567890/reference/1234567890",
"sampleId": "fastq-sample",
"sequenceStoreId": "1234567890",
"status": "ACTIVE",
"subjectId": "fastq-subject"
}
]
}
```
Untuk informasi selengkapnya, lihat [Penyimpanan Omics](https://docs.aws.amazon.com/omics/latest/dev/sequence-stores.html) di Panduan *Pengembang Amazon Omics*.
+ Untuk detail API, lihat [ListReadSets](https://awscli.amazonaws.com/v2/documentation/api/latest/reference/omics/list-read-sets.html)di *Referensi AWS CLI Perintah*.
### `list-reference-import-jobs`
Contoh kode berikut menunjukkan cara menggunakan`list-reference-import-jobs`.
**AWS CLI**
**Untuk mendapatkan daftar lowongan kerja impor referensi**
`list-reference-import-jobs`Contoh berikut mendapatkan daftar pekerjaan impor referensi untuk toko referensi dengan id`1234567890`.
```
aws omics list-reference-import-jobs \
--reference-store-id 1234567890
```
Output:
```
{
"importJobs": [
{
"completionTime": "2022-11-23T19:54:58.204Z",
"creationTime": "2022-11-23T19:53:20.729Z",
"id": "1234567890",
"referenceStoreId": "1234567890",
"roleArn": "arn:aws:iam::123456789012:role/omics-service-role-serviceRole-W8O1XMPL7QZ",
"status": "COMPLETED"
},
{
"creationTime": "2022-11-23T20:34:03.250Z",
"id": "1234567890",
"referenceStoreId": "1234567890",
"roleArn": "arn:aws:iam::123456789012:role/omics-service-role-serviceRole-W8O1XMPL7QZ",
"status": "IN_PROGRESS"
}
]
}
```
Untuk informasi selengkapnya, lihat [Penyimpanan Omics](https://docs.aws.amazon.com/omics/latest/dev/sequence-stores.html) di Panduan *Pengembang Amazon Omics*.
+ Untuk detail API, lihat [ListReferenceImportJobs](https://awscli.amazonaws.com/v2/documentation/api/latest/reference/omics/list-reference-import-jobs.html)di *Referensi AWS CLI Perintah*.
### `list-reference-stores`
Contoh kode berikut menunjukkan cara menggunakan`list-reference-stores`.
**AWS CLI**
**Untuk mendapatkan daftar toko referensi**
`list-reference-stores`Contoh berikut mendapat daftar toko referensi.
```
aws omics list-reference-stores
```
Output:
```
{
"referenceStores": [
{
"arn": "arn:aws:omics:us-west-2:123456789012:referenceStore/1234567890",
"creationTime": "2022-11-22T22:13:25.947Z",
"id": "1234567890",
"name": "my-ref-store"
}
]
}
```
Untuk informasi selengkapnya, lihat [Penyimpanan Omics](https://docs.aws.amazon.com/omics/latest/dev/sequence-stores.html) di Panduan *Pengembang Amazon Omics*.
+ Untuk detail API, lihat [ListReferenceStores](https://awscli.amazonaws.com/v2/documentation/api/latest/reference/omics/list-reference-stores.html)di *Referensi AWS CLI Perintah*.
### `list-references`
Contoh kode berikut menunjukkan cara menggunakan`list-references`.
**AWS CLI**
**Untuk mendapatkan daftar referensi**
`list-references`Contoh berikut mendapatkan daftar referensi genom untuk toko referensi dengan id`1234567890`.
```
aws omics list-references \
--reference-store-id 1234567890
```
Output:
```
{
"references": [
{
"arn": "arn:aws:omics:us-west-2:123456789012:referenceStore/1234567890/reference/1234567890",
"creationTime": "2022-11-22T22:27:09.033Z",
"id": "1234567890",
"md5": "7ff134953dcca8c8997453bbb80b6b5e",
"name": "assembly-38",
"referenceStoreId": "1234567890",
"status": "ACTIVE",
"updateTime": "2022-11-22T22:27:09.033Z"
}
]
}
```
Untuk informasi selengkapnya, lihat [Penyimpanan Omics](https://docs.aws.amazon.com/omics/latest/dev/sequence-stores.html) di Panduan *Pengembang Amazon Omics*.
+ Untuk detail API, lihat [ListReferences](https://awscli.amazonaws.com/v2/documentation/api/latest/reference/omics/list-references.html)di *Referensi AWS CLI Perintah*.
### `list-run-groups`
Contoh kode berikut menunjukkan cara menggunakan`list-run-groups`.
**AWS CLI**
**Untuk mendapatkan daftar grup lari**
`list-run-groups`Contoh berikut mendapat daftar grup run.
```
aws omics list-run-groups
```
Output:
```
{
"items": [
{
"arn": "arn:aws:omics:us-west-2:123456789012:runGroup/1234567",
"creationTime": "2022-12-01T00:58:42.915219Z",
"id": "1234567",
"maxCpus": 20,
"maxDuration": 600,
"name": "cram-convert"
}
]
}
```
Untuk informasi selengkapnya, lihat [Membuat grup yang dijalankan](https://docs.aws.amazon.com/omics/latest/dev/creating-run-groups.html) di *Panduan AWS HealthOmics Pengguna*.
+ Untuk detail API, lihat [ListRunGroups](https://awscli.amazonaws.com/v2/documentation/api/latest/reference/omics/list-run-groups.html)di *Referensi AWS CLI Perintah*.
### `list-run-tasks`
Contoh kode berikut menunjukkan cara menggunakan`list-run-tasks`.
**AWS CLI**
**Untuk mendapatkan daftar tugas**
`list-run-tasks`Contoh berikut mendapatkan daftar tugas untuk menjalankan alur kerja.
```
aws omics list-run-tasks \
--id 1234567
```
Output:
```
{
"items": [
{
"cpus": 1,
"creationTime": "2022-11-30T23:13:00.718651Z",
"memory": 15,
"name": "CramToBamTask",
"startTime": "2022-11-30T23:17:47.016Z",
"status": "COMPLETED",
"stopTime": "2022-11-30T23:18:21.503Z",
"taskId": "1234567"
},
{
"cpus": 1,
"creationTime": "2022-11-30T23:18:32.315606Z",
"memory": 4,
"name": "ValidateSamFile",
"startTime": "2022-11-30T23:23:40.165Z",
"status": "COMPLETED",
"stopTime": "2022-11-30T23:24:14.766Z",
"taskId": "1234567"
}
]
}
```
Untuk informasi selengkapnya, lihat [Siklus hidup tugas yang HealthOmics dijalankan](https://docs.aws.amazon.com/omics/latest/dev/workflow-run-tasks.html) di *AWS HealthOmics Panduan Pengguna*.
+ Untuk detail API, lihat [ListRunTasks](https://awscli.amazonaws.com/v2/documentation/api/latest/reference/omics/list-run-tasks.html)di *Referensi AWS CLI Perintah*.
### `list-runs`
Contoh kode berikut menunjukkan cara menggunakan`list-runs`.
**AWS CLI**
**Untuk mendapatkan daftar alur kerja berjalan**
`list-runs`Contoh berikut mendapatkan daftar alur kerja berjalan.
```
aws omics list-runs
```
Output:
```
{
"items": [
{
"arn": "arn:aws:omics:us-west-2:123456789012:run/1234567",
"creationTime": "2022-12-02T23:20:01.202074Z",
"id": "1234567",
"name": "cram-to-bam",
"priority": 1,
"startTime": "2022-12-02T23:29:18.115Z",
"status": "COMPLETED",
"stopTime": "2022-12-02T23:57:54.428812Z",
"storageCapacity": 10,
"workflowId": "1234567"
},
{
"arn": "arn:aws:omics:us-west-2:123456789012:run/1234567",
"creationTime": "2022-12-03T00:16:57.180066Z",
"id": "1234567",
"name": "cram-to-bam",
"priority": 1,
"startTime": "2022-12-03T00:26:50.233Z",
"status": "FAILED",
"stopTime": "2022-12-03T00:37:21.451340Z",
"storageCapacity": 10,
"workflowId": "1234567"
},
{
"arn": "arn:aws:omics:us-west-2:123456789012:run/1234567",
"creationTime": "2022-12-05T17:57:08.444817Z",
"id": "1234567",
"name": "cram-to-bam",
"status": "STARTING",
"workflowId": "1234567"
}
]
}
```
*Untuk informasi selengkapnya, lihat [Menjalankan siklus hidup dalam alur kerja di Panduan](https://docs.aws.amazon.com/omics/latest/dev/monitoring-runs.html) Pengguna.AWS HealthOmics *
+ Untuk detail API, lihat [ListRuns](https://awscli.amazonaws.com/v2/documentation/api/latest/reference/omics/list-runs.html)di *Referensi AWS CLI Perintah*.
### `list-sequence-stores`
Contoh kode berikut menunjukkan cara menggunakan`list-sequence-stores`.
**AWS CLI**
**Untuk mendapatkan daftar toko urutan**
`list-sequence-stores`Contoh berikut mendapat daftar toko urutan.
```
aws omics list-sequence-stores
```
Output:
```
{
"sequenceStores": [
{
"arn": "arn:aws:omics:us-west-2:123456789012:sequenceStore/1234567890",
"creationTime": "2022-11-23T01:24:33.629Z",
"id": "1234567890",
"name": "my-seq-store"
}
]
}
```
Untuk informasi selengkapnya, lihat [Penyimpanan Omics](https://docs.aws.amazon.com/omics/latest/dev/sequence-stores.html) di Panduan *Pengembang Amazon Omics*.
+ Untuk detail API, lihat [ListSequenceStores](https://awscli.amazonaws.com/v2/documentation/api/latest/reference/omics/list-sequence-stores.html)di *Referensi AWS CLI Perintah*.
### `list-shares`
Contoh kode berikut menunjukkan cara menggunakan`list-shares`.
**AWS CLI**
**Untuk mencantumkan saham yang tersedia dari data HealthOmics analitik**
`list-shares`Contoh berikut mencantumkan semua saham yang telah dibuat untuk pemilik sumber daya.
```
aws omics list-shares \
--resource-owner SELF
```
Output:
```
{
"shares": [
{
"shareId": "595c1cbd-a008-4eca-a887-954d30c91c6e",
"name": "myShare",
"resourceArn": "arn:aws:omics:us-west-2:555555555555:variantStore/store_1",
"principalSubscriber": "123456789012",
"ownerId": "555555555555",
"status": "PENDING"
}
{
"shareId": "39b65d0d-4368-4a19-9814-b0e31d73c10a",
"name": "myShare3456",
"resourceArn": "arn:aws:omics:us-west-2:555555555555:variantStore/store_2",
"principalSubscriber": "123456789012",
"ownerId": "555555555555",
"status": "ACTIVE"
},
{
"shareId": "203152f5-eef9-459d-a4e0-a691668d44ef",
"name": "myShare4",
"resourceArn": "arn:aws:omics:us-west-2:555555555555:variantStore/store_3",
"principalSubscriber": "123456789012",
"ownerId": "555555555555",
"status": "ACTIVE"
}
]
}
```
Untuk informasi selengkapnya, lihat [Berbagi lintas akun](https://docs.aws.amazon.com/omics/latest/dev/cross-account-sharing.html) di *Panduan AWS HealthOmics Pengguna*.
+ Untuk detail API, lihat [ListShares](https://awscli.amazonaws.com/v2/documentation/api/latest/reference/omics/list-shares.html)di *Referensi AWS CLI Perintah*.
### `list-tags-for-resource`
Contoh kode berikut menunjukkan cara menggunakan`list-tags-for-resource`.
**AWS CLI**
**Untuk mendapatkan daftar tag**
`list-tags-for-resource`Contoh berikut mendapat daftar tag untuk alur kerja dengan id`1234567`.
```
aws omics list-tags-for-resource \
--resource-arn arn:aws:omics:us-west-2:123456789012:workflow/1234567
```
Output:
```
{
"tags": {
"department": "analytics"
}
}
```
Untuk informasi selengkapnya, lihat [Menandai sumber daya di Amazon Omics di Panduan](https://docs.aws.amazon.com/omics/latest/dev/workflows.html) Pengembang *Amazon Omics*.
+ Untuk detail API, lihat [ListTagsForResource](https://awscli.amazonaws.com/v2/documentation/api/latest/reference/omics/list-tags-for-resource.html)di *Referensi AWS CLI Perintah*.
### `list-variant-import-jobs`
Contoh kode berikut menunjukkan cara menggunakan`list-variant-import-jobs`.
**AWS CLI**
**Untuk mendapatkan daftar lowongan pekerjaan impor varian**
`list-variant-import-jobs`Contoh berikut mendapatkan daftar pekerjaan impor varian.
```
aws omics list-variant-import-jobs
```
Output:
```
{
"variantImportJobs": [
{
"creationTime": "2022-11-23T22:47:02.514002Z",
"destinationName": "my_var_store",
"id": "69cb65d6-xmpl-4a4a-9025-4565794b684e",
"roleArn": "arn:aws:iam::123456789012:role/omics-service-role-serviceRole-W8O1XMPL7QZ",
"runLeftNormalization": false,
"status": "COMPLETED",
"updateTime": "2022-11-23T22:49:17.976597Z"
},
{
"creationTime": "2022-11-23T22:42:50.037812Z",
"destinationName": "my_var_store",
"id": "edd7b8ce-xmpl-47e2-bc99-258cac95a508",
"roleArn": "arn:aws:iam::123456789012:role/omics-service-role-serviceRole-W8O1XMPL7QZ",
"runLeftNormalization": false,
"status": "COMPLETED",
"updateTime": "2022-11-23T22:45:26.009880Z"
}
]
}
```
Untuk informasi selengkapnya, lihat [Omics Analytics](https://docs.aws.amazon.com/omics/latest/dev/omics-analytics.html) di Panduan *Pengembang Amazon Omics*.
+ Untuk detail API, lihat [ListVariantImportJobs](https://awscli.amazonaws.com/v2/documentation/api/latest/reference/omics/list-variant-import-jobs.html)di *Referensi AWS CLI Perintah*.
### `list-variant-stores`
Contoh kode berikut menunjukkan cara menggunakan`list-variant-stores`.
**AWS CLI**
**Untuk mendapatkan daftar toko varian**
`list-variant-stores`Contoh berikut mendapat daftar toko varian.
```
aws omics list-variant-stores
```
Output:
```
{
"variantStores": [
{
"creationTime": "2022-11-23T22:09:07.534499Z",
"id": "02dexmplcfdd",
"name": "my_var_store",
"reference": {
"referenceArn": "arn:aws:omics:us-west-2:123456789012:referenceStore/1234567890/reference/1234567890"
},
"status": "CREATING",
"storeArn": "arn:aws:omics:us-west-2:123456789012:variantStore/my_var_store",
"storeSizeBytes": 0,
"updateTime": "2022-11-23T22:09:24.931711Z"
},
{
"creationTime": "2022-09-23T23:00:09.140265Z",
"id": "8777xmpl1a24",
"name": "myvstore0",
"status": "ACTIVE",
"storeArn": "arn:aws:omics:us-west-2:123456789012:variantStore/myvstore0",
"storeSizeBytes": 0,
"updateTime": "2022-09-23T23:03:26.013220Z"
}
]
}
```
Untuk informasi selengkapnya, lihat [Omics Analytics](https://docs.aws.amazon.com/omics/latest/dev/omics-analytics.html) di Panduan *Pengembang Amazon Omics*.
+ Untuk detail API, lihat [ListVariantStores](https://awscli.amazonaws.com/v2/documentation/api/latest/reference/omics/list-variant-stores.html)di *Referensi AWS CLI Perintah*.
### `list-workflows`
Contoh kode berikut menunjukkan cara menggunakan`list-workflows`.
**AWS CLI**
**Untuk mendapatkan daftar alur kerja**
`list-workflows`Contoh berikut mendapat daftar alur kerja.
```
aws omics list-workflows
```
Output:
```
{
"items": [
{
"arn": "arn:aws:omics:us-west-2:123456789012:workflow/1234567",
"creationTime": "2022-09-23T23:08:22.041227Z",
"digest": "nSCNo/qMWFxmplXpUdokXJnwgneOaxyyc2YOxVxrJTE=",
"id": "1234567",
"name": "my-wkflow-0",
"status": "ACTIVE",
"type": "PRIVATE"
},
{
"arn": "arn:aws:omics:us-west-2:123456789012:workflow/1234567",
"creationTime": "2022-11-30T22:33:16.225368Z",
"digest": "sha256:c54bxmpl742dcc26f7fa1f10e37550ddd8f251f418277c0a58e895b801ed28cf",
"id": "1234567",
"name": "cram-converter",
"status": "ACTIVE",
"type": "PRIVATE"
}
]
}
```
Untuk informasi selengkapnya, lihat [Membuat alur kerja pribadi](https://docs.aws.amazon.com/omics/latest/dev/workflows-setup.html) di *Panduan AWS HealthOmics Pengguna*.
+ Untuk detail API, lihat [ListWorkflows](https://awscli.amazonaws.com/v2/documentation/api/latest/reference/omics/list-workflows.html)di *Referensi AWS CLI Perintah*.
### `start-annotation-import-job`
Contoh kode berikut menunjukkan cara menggunakan`start-annotation-import-job`.
**AWS CLI**
**Untuk mengimpor anotasi**
`start-annotation-import-job`Contoh berikut mengimpor anotasi dari Amazon S3.
```
aws omics start-annotation-import-job \
--destination-name tsv_ann_store \
--no-run-left-normalization \
--role-arn arn:aws:iam::123456789012:role/omics-service-role-serviceRole-W8O1XMPL7QZ \
--items source=s3://omics-artifacts-01d6xmpl4e72dd32/targetedregions.bed.gz
```
Output:
```
{
"jobId": "984162c7-xmpl-4d23-ab47-286f7950bfbf"
}
```
Untuk informasi selengkapnya, lihat [Omics Analytics](https://docs.aws.amazon.com/omics/latest/dev/omics-analytics.html) di Panduan *Pengembang Amazon Omics*.
+ Untuk detail API, lihat [StartAnnotationImportJob](https://awscli.amazonaws.com/v2/documentation/api/latest/reference/omics/start-annotation-import-job.html)di *Referensi AWS CLI Perintah*.
### `start-read-set-activation-job`
Contoh kode berikut menunjukkan cara menggunakan`start-read-set-activation-job`.
**AWS CLI**
**Untuk mengaktifkan set baca yang diarsipkan**
`start-read-set-activation-job`Contoh berikut mengaktifkan dua set baca.
```
aws omics start-read-set-activation-job \
--sequence-store-id 1234567890 \
--sources readSetId=1234567890 readSetId=1234567890
```
Output:
```
{
"creationTime": "2022-12-06T22:35:10.100Z",
"id": "1234567890",
"sequenceStoreId": "1234567890",
"status": "SUBMITTED"
}
```
Untuk informasi selengkapnya, lihat [Penyimpanan Omics](https://docs.aws.amazon.com/omics/latest/dev/sequence-stores.html) di Panduan *Pengembang Amazon Omics*.
+ Untuk detail API, lihat [StartReadSetActivationJob](https://awscli.amazonaws.com/v2/documentation/api/latest/reference/omics/start-read-set-activation-job.html)di *Referensi AWS CLI Perintah*.
### `start-read-set-export-job`
Contoh kode berikut menunjukkan cara menggunakan`start-read-set-export-job`.
**AWS CLI**
**Untuk mengekspor set baca**
`start-read-set-export-job`Contoh berikut mengekspor dua set baca ke Amazon S3.
```
aws omics start-read-set-export-job \
--sequence-store-id 1234567890 \
--sources readSetId=1234567890 readSetId=1234567890 \
--role-arn arn:aws:iam::123456789012:role/omics-service-role-serviceRole-W8O1XMPL7QZ
\
--destination s3://omics-artifacts-01d6xmpl4e72dd32/read-set-export/
```
Output:
```
{
"creationTime": "2022-12-06T22:37:18.612Z",
"destination": "s3://omics-artifacts-01d6xmpl4e72dd32/read-set-export/",
"id": "1234567890",
"sequenceStoreId": "1234567890",
"status": "SUBMITTED"
}
```
Untuk informasi selengkapnya, lihat [Penyimpanan Omics](https://docs.aws.amazon.com/omics/latest/dev/sequence-stores.html) di Panduan *Pengembang Amazon Omics*.
+ Untuk detail API, lihat [StartReadSetExportJob](https://awscli.amazonaws.com/v2/documentation/api/latest/reference/omics/start-read-set-export-job.html)di *Referensi AWS CLI Perintah*.
### `start-read-set-import-job`
Contoh kode berikut menunjukkan cara menggunakan`start-read-set-import-job`.
**AWS CLI**
**Untuk mengimpor set baca**
`start-read-set-import-job`Contoh berikut mengimpor set baca.
```
aws omics start-read-set-import-job \
--sequence-store-id 1234567890 \
--role-arn arn:aws:iam::123456789012:role/omics-service-role-serviceRole-W8O1XMPL7QZ \
--sources file://readset-sources.json
```
readset-sources.json adalah dokumen JSON dengan konten berikut.
```
[
{
"sourceFiles":
{
"source1": "s3://omics-artifacts-01d6xmpl4e72dd32/HG00100.chrom20.ILLUMINA.bwa.GBR.low_coverage.20101123.bam"
},
"sourceFileType": "BAM",
"subjectId": "bam-subject",
"sampleId": "bam-sample",
"referenceArn": "arn:aws:omics:us-west-2:123456789012:referenceStore/1234567890/reference/1234567890",
"name": "HG00100"
}
]
```
Output:
```
{
"creationTime": "2022-11-23T01:36:38.158Z",
"id": "1234567890",
"roleArn": "arn:aws:iam::123456789012:role/omics-service-role-serviceRole-W8O1XMPL7QZ",
"sequenceStoreId": "1234567890",
"status": "SUBMITTED"
}
```
Untuk informasi selengkapnya, lihat [Penyimpanan Omics](https://docs.aws.amazon.com/omics/latest/dev/sequence-stores.html) di Panduan *Pengembang Amazon Omics*.
+ Untuk detail API, lihat [StartReadSetImportJob](https://awscli.amazonaws.com/v2/documentation/api/latest/reference/omics/start-read-set-import-job.html)di *Referensi AWS CLI Perintah*.
### `start-reference-import-job`
Contoh kode berikut menunjukkan cara menggunakan`start-reference-import-job`.
**AWS CLI**
**Untuk mengimpor genom referensi**
`start-reference-import-job`Contoh berikut mengimpor genom referensi dari Amazon S3.
```
aws omics start-reference-import-job \
--reference-store-id 1234567890 \
--role-arn arn:aws:iam::123456789012:role/omics-service-role-serviceRole-W8O1XMPL7QZ \
--sources sourceFile=s3://omics-artifacts-01d6xmpl4e72dd32/Homo_sapiens_assembly38.fasta,name=assembly-38
```
Output:
```
{
"creationTime": "2022-11-22T22:25:41.124Z",
"id": "1234567890",
"referenceStoreId": "1234567890",
"roleArn": "arn:aws:iam::123456789012:role/omics-service-role-serviceRole-W8O1XMPL7QZ",
"status": "SUBMITTED"
}
```
Untuk informasi selengkapnya, lihat [Penyimpanan Omics](https://docs.aws.amazon.com/omics/latest/dev/sequence-stores.html) di Panduan *Pengembang Amazon Omics*.
+ Untuk detail API, lihat [StartReferenceImportJob](https://awscli.amazonaws.com/v2/documentation/api/latest/reference/omics/start-reference-import-job.html)di *Referensi AWS CLI Perintah*.
### `start-run`
Contoh kode berikut menunjukkan cara menggunakan`start-run`.
**AWS CLI**
**Untuk menjalankan alur kerja**
`start-run`Contoh berikut menjalankan alur kerja dengan ID`1234567`.
```
aws omics start-run \
--workflow-id 1234567 \
--role-arn arn:aws:iam::123456789012:role/omics-service-role-serviceRole-W8O1XMPL7QZ \
--name 'cram-to-bam' \
--output-uri s3://omics-artifacts-01d6xmpl4e72dd32/workflow-output/ \
--run-group-id 1234567 \
--priority 1 \
--storage-capacity 10 \
--log-level ALL \
--parameters file://workflow-inputs.json
```
workflow-inputs.json adalah dokumen JSON dengan konten berikut.
```
{
"sample_name": "NA12878",
"input_cram": "s3://omics-artifacts-01d6xmpl4e72dd32/NA12878.cram",
"ref_dict": "s3://omics-artifacts-01d6xmpl4e72dd32/Homo_sapiens_assembly38.dict",
"ref_fasta": "s3://omics-artifacts-01d6xmpl4e72dd32/Homo_sapiens_assembly38.fasta",
"ref_fasta_index": "omics-artifacts-01d6xmpl4e72dd32/Homo_sapiens_assembly38.fasta.fai"
}
```
Output:
```
{
"arn": "arn:aws:omics:us-west-2:123456789012:run/1234567",
"id": "1234567",
"status": "PENDING",
"tags": {}
}
```
Untuk informasi selengkapnya, lihat [Memulai](https://docs.aws.amazon.com/omics/latest/dev/starting-a-run.html) proses di *Panduan AWS HealthOmics Pengguna*.
**Untuk memuat file sumber dari Amazon Omics**
Anda juga dapat memuat file sumber dari penyimpanan Amazon Omics, dengan menggunakan layanan URIs khusus. Contoh file workflow-inputs.json berikut menggunakan Amazon URIs Omics untuk kumpulan baca dan sumber genom referensi.
```
{
"sample_name": "NA12878",
"input_cram": "omics://123456789012.storage.us-west-2.amazonaws.com/1234567890/readSet/1234567890/source1",
"ref_dict": "s3://omics-artifacts-01d6xmpl4e72dd32/Homo_sapiens_assembly38.dict",
"ref_fasta": "omics://123456789012.storage.us-west-2.amazonaws.com/1234567890/reference/1234567890",
"ref_fasta_index": "omics://123456789012.storage.us-west-2.amazonaws.com/1234567890/reference/1234567890/index"
}
```
+ Untuk detail API, lihat [StartRun](https://awscli.amazonaws.com/v2/documentation/api/latest/reference/omics/start-run.html)di *Referensi AWS CLI Perintah*.
### `start-variant-import-job`
Contoh kode berikut menunjukkan cara menggunakan`start-variant-import-job`.
**AWS CLI**
**Untuk mengimpor file varian**
`start-variant-import-job`Contoh berikut mengimpor file varian format VCF.
```
aws omics start-variant-import-job \
--destination-name my_var_store \
--no-run-left-normalization \
--role-arn arn:aws:iam::123456789012:role/omics-service-role-serviceRole-W8O1XMPL7QZ \
--items source=s3://omics-artifacts-01d6xmpl4e72dd32/Homo_sapiens_assembly38.known_indels.vcf.gz
```
Output:
```
{
"jobId": "edd7b8ce-xmpl-47e2-bc99-258cac95a508"
}
```
Untuk informasi selengkapnya, lihat [Omics Analytics](https://docs.aws.amazon.com/omics/latest/dev/omics-analytics.html) di Panduan *Pengembang Amazon Omics*.
+ Untuk detail API, lihat [StartVariantImportJob](https://awscli.amazonaws.com/v2/documentation/api/latest/reference/omics/start-variant-import-job.html)di *Referensi AWS CLI Perintah*.
### `tag-resource`
Contoh kode berikut menunjukkan cara menggunakan`tag-resource`.
**AWS CLI**
**Untuk menandai sumber daya**
`tag-resource`Contoh berikut menambahkan `department` tag ke alur kerja dengan id`1234567`.
```
aws omics tag-resource \
--resource-arn arn:aws:omics:us-west-2:123456789012:workflow/1234567 \
--tags department=analytics
```
Untuk informasi selengkapnya, lihat [Menandai sumber daya di Amazon Omics di Panduan](https://docs.aws.amazon.com/omics/latest/dev/workflows.html) Pengembang *Amazon Omics*.
+ Untuk detail API, lihat [TagResource](https://awscli.amazonaws.com/v2/documentation/api/latest/reference/omics/tag-resource.html)di *Referensi AWS CLI Perintah*.
### `untag-resource`
Contoh kode berikut menunjukkan cara menggunakan`untag-resource`.
**AWS CLI**
**Untuk menghapus tag dari sumber daya**
`untag-resource`Contoh berikut menghapus `department` tag dari alur kerja.
```
aws omics untag-resource \
--resource-arn arn:aws:omics:us-west-2:123456789012:workflow/1234567 \
--tag-keys department
```
Untuk informasi selengkapnya, lihat [Penyimpanan Omics](https://docs.aws.amazon.com/omics/latest/dev/tagging.html) di Panduan *Pengembang Amazon Omics*.
+ Untuk detail API, lihat [UntagResource](https://awscli.amazonaws.com/v2/documentation/api/latest/reference/omics/untag-resource.html)di *Referensi AWS CLI Perintah*.
### `update-annotation-store`
Contoh kode berikut menunjukkan cara menggunakan`update-annotation-store`.
**AWS CLI**
**Untuk memperbarui toko anotasi**
`update-annotation-store`Contoh berikut memperbarui deskripsi toko anotasi bernama`my_vcf_store`.
```
aws omics update-annotation-store \
--name my_vcf_store \
--description "VCF annotation store"
```
Output:
```
{
"creationTime": "2022-12-05T18:00:56.101860Z",
"description": "VCF annotation store",
"id": "bd6axmpl2444",
"name": "my_vcf_store",
"reference": {
"referenceArn": "arn:aws:omics:us-west-2:123456789012:referenceStore/1234567890/reference/1234567890"
},
"status": "ACTIVE",
"storeFormat": "VCF",
"updateTime": "2022-12-05T18:13:16.100051Z"
}
```
Untuk informasi selengkapnya, lihat [Omics Analytics](https://docs.aws.amazon.com/omics/latest/dev/omics-analytics.html) di Panduan *Pengembang Amazon Omics*.
+ Untuk detail API, lihat [UpdateAnnotationStore](https://awscli.amazonaws.com/v2/documentation/api/latest/reference/omics/update-annotation-store.html)di *Referensi AWS CLI Perintah*.
### `update-run-group`
Contoh kode berikut menunjukkan cara menggunakan`update-run-group`.
**AWS CLI**
**Untuk memperbarui grup run**
`update-run-group`Contoh berikut memperbarui pengaturan grup run dengan id`1234567`.
```
aws omics update-run-group \
--id 1234567 \
--max-cpus 10
```
Output:
```
{
"arn": "arn:aws:omics:us-west-2:123456789012:runGroup/1234567",
"creationTime": "2022-12-01T00:58:42.915219Z",
"id": "1234567",
"maxCpus": 10,
"maxDuration": 600,
"name": "cram-convert",
"tags": {}
}
```
Untuk informasi selengkapnya, lihat [Alur Kerja Omics](https://docs.aws.amazon.com/omics/latest/dev/workflows.html) di Panduan Pengembang *Amazon Omics*.
+ Untuk detail API, lihat [UpdateRunGroup](https://awscli.amazonaws.com/v2/documentation/api/latest/reference/omics/update-run-group.html)di *Referensi AWS CLI Perintah*.
### `update-variant-store`
Contoh kode berikut menunjukkan cara menggunakan`update-variant-store`.
**AWS CLI**
**Untuk memperbarui toko varian**
`update-variant-store`Contoh berikut memperbarui deskripsi toko varian bernama`my_var_store`.
```
aws omics update-variant-store \
--name my_var_store \
--description "variant store"
```
Output:
```
{
"creationTime": "2022-11-23T22:09:07.534499Z",
"description": "variant store",
"id": "02dexmplcfdd",
"name": "my_var_store",
"reference": {
"referenceArn": "arn:aws:omics:us-west-2:123456789012:referenceStore/1234567890/reference/1234567890"
},
"status": "ACTIVE",
"updateTime": "2022-12-05T18:23:37.686402Z"
}
```
Untuk informasi selengkapnya, lihat [Omics Analytics](https://docs.aws.amazon.com/omics/latest/dev/omics-analytics.html) di Panduan *Pengembang Amazon Omics*.
+ Untuk detail API, lihat [UpdateVariantStore](https://awscli.amazonaws.com/v2/documentation/api/latest/reference/omics/update-variant-store.html)di *Referensi AWS CLI Perintah*.
### `update-workflow`
Contoh kode berikut menunjukkan cara menggunakan`update-workflow`.
**AWS CLI**
**Untuk memperbarui alur kerja**
`update-workflow`Contoh berikut memperbarui deskripsi alur kerja dengan ID`1234567`.
```
aws omics update-workflow \
--id 1234567 \
--description "copy workflow"
```
Untuk informasi selengkapnya, lihat [Membuat atau memperbarui alur kerja](https://docs.aws.amazon.com/omics/latest/dev/creating-private-workflows.html) di *Panduan AWS HealthOmics Pengguna*.
+ Untuk detail API, lihat [UpdateWorkflow](https://awscli.amazonaws.com/v2/documentation/api/latest/reference/omics/update-workflow.html)di *Referensi AWS CLI Perintah*.
### `upload-read-set-part`
Contoh kode berikut menunjukkan cara menggunakan`upload-read-set-part`.
**AWS CLI**
**Untuk mengunggah bagian set baca.**
`upload-read-set-part`Contoh berikut mengunggah bagian tertentu dari set baca.
```
aws omics upload-read-set-part \
--sequence-store-id 0123456789 \
--upload-id 1122334455 \
--part-source SOURCE1 \
--part-number 1 \
--payload /path/to/file/read_1_part_1.fastq.gz
```
Output:
```
{
"checksum": "984979b9928ae8d8622286c4a9cd8e99d964a22d59ed0f5722e1733eb280e635"
}
```
Untuk informasi selengkapnya, lihat [Unggahan langsung ke penyimpanan urutan](https://docs.aws.amazon.com/omics/latest/dev/synchronous-uploads.html) di *Panduan AWS HealthOmics Pengguna*.
+ Untuk detail API, lihat [UploadReadSetPart](https://awscli.amazonaws.com/v2/documentation/api/latest/reference/omics/upload-read-set-part.html)di *Referensi AWS CLI Perintah*.